Aliases for LOC101928000 Gene

Subcategory (RNA class) for LOC101928000 Gene

lncRNA

Quality Score for this RNA gene is

11

Aliases for LOC101928000 Gene

  • Uncharacterized LOC101928000 3

External Ids for LOC101928000 Gene

Previous GeneCards Identifiers for LOC101928000 Gene

  • GC17U901823
  • GC17P005021

Summaries for LOC101928000 Gene

GeneCards Summary for LOC101928000 Gene

LOC101928000 (Uncharacterized LOC101928000) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101928000 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101928000 Gene

Genomics for LOC101928000 Gene

GeneHancer (GH) Regulatory Elements for LOC101928000 Gene

Promoters and enhancers for LOC101928000 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J005110 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 +0.1 66 3.2 ZNF785 ZNF24 ZBTB40 SIX5 ZBTB6 MLX RBPJ POLR2A USF2 CREB1 ZNF232 ENSG00000234327 LOC101928000 lnc-SLC52A1-3 ENSG00000261879 DHX33 RPAIN ANKFY1 ZNF594 ENSG00000263220
GH17J005115 Enhancer 0.2 Ensembl 0.6 +3.4 3366 0.2 USP6 LOC101928000 ZNF232
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101928000 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101928000 Gene

Genomic Locations for LOC101928000 Gene
chr17:5,111,935-5,114,397
(GRCh38/hg38)
Size:
2,463 bases
Orientation:
Plus strand
chr17:5,014,763-5,017,674
(GRCh37/hg19)
Size:
2,912 bases
Orientation:
Plus strand

Genomic View for LOC101928000 Gene

Genes around LOC101928000 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101928000 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101928000 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101928000 Gene

Proteins for LOC101928000 Gene

Post-translational modifications for LOC101928000 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101928000 Gene

Domains & Families for LOC101928000 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101928000 Gene

Function for LOC101928000 Gene

Phenotypes From GWAS Catalog for LOC101928000 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101928000 Gene

Localization for LOC101928000 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101928000 Gene

Pathways & Interactions for LOC101928000 Gene

PathCards logo

SuperPathways for LOC101928000 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101928000 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101928000 Gene

Drugs & Compounds for LOC101928000 Gene

No Compound Related Data Available

Transcripts for LOC101928000 Gene

mRNA/cDNA for LOC101928000 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) RNACentral transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101928000 Gene

No ASD Table

Relevant External Links for LOC101928000 Gene

GeneLoc Exon Structure for
LOC101928000

Expression for LOC101928000 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101928000 Gene

genes like me logo Genes that share expression patterns with LOC101928000: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101928000 Gene

Orthologs for LOC101928000 Gene

No data available for Orthologs and Evolution for LOC101928000 Gene

Paralogs for LOC101928000 Gene

No data available for Paralogs for LOC101928000 Gene

Variants for LOC101928000 Gene

Sequence variations from dbSNP and Humsavar for LOC101928000 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000177183 -- 5,114,524(+) G/A/C downstream_transcript_variant
rs1001707359 -- 5,112,871(+) A/T intron_variant
rs1002200070 -- 5,111,098(+) G/A upstream_transcript_variant
rs1003428346 -- 5,112,223(+) C/T intron_variant
rs1003618734 -- 5,112,011(+) G/A/C/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101928000 Gene

Disorders for LOC101928000 Gene

No disorders were found for LOC101928000 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101928000 Gene

Publications for LOC101928000 Gene

No publications were found for LOC101928000 Gene.

No data available for External Links for LOC101928000 Gene

Products for LOC101928000 Gene

Sources for LOC101928000 Gene