Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC101927979 Gene

Subcategory (RNA class) for LOC101927979 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927979 Gene

  • Translation Initiation Factor IF-2 3
  • AC004771.3 5

External Ids for LOC101927979 Gene

Previous GeneCards Identifiers for LOC101927979 Gene

  • GC17U901886

Summaries for LOC101927979 Gene

GeneCards Summary for LOC101927979 Gene

LOC101927979 (Translation Initiation Factor IF-2) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927979 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927979 Gene

Genomics for LOC101927979 Gene

GeneHancer (GH) Regulatory Elements for LOC101927979 Gene

Promoters and enhancers for LOC101927979 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I004985 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 561.2 -0.1 -93 3.7 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IRF4 YY1 CAMTA2 ENSG00000262678 LOC101927979 ZNF594 LOC100130950 CHRNE ZNF232 DERL2 NUP88 MIS12
GH17I005191 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 35.5 +204.2 204219 1.8 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 POLR2B ZNF213 ZNF594 LOC100130950 LOC101927979 RPAIN ZNF232 ANKFY1 MIS12 PELP1 RABEP1 DERL2
GH17I005437 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 34.3 +451.1 451064 2.8 CLOCK ARID4B NEUROD1 SIN3A DMAP1 IRF4 ZNF213 E2F8 ZNF207 ZNF143 C1QBP LOC101927979 RPAIN ZNF232 DERL2 MIS12 ENSG00000263272 MYBBP1A LOC100130950 NUP88
GH17I004262 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 26 -724.0 -723985 2.3 HDGF PKNOX1 CLOCK ARID4B NEUROD1 SIN3A DMAP1 YY1 SLC30A9 POLR2B ANKFY1 ZNF232 LOC101927979 LOC100130950 ZNF594 LOC105371492 ENSG00000263164 MYBBP1A CYB5D2 RYKP1
GH17I004133 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 20.3 -848.1 -848140 12.4 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CYB5D2 ZZEF1 ZNF232 PELP1 MYBBP1A LOC101927979 ANKFY1 INCA1 LOC105371492 PIR51897
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101927979 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927979 Gene

Genomic Locations for LOC101927979 Gene
chr17:4,987,682-4,988,778
(GRCh38/hg38)
Size:
1,097 bases
Orientation:
Plus strand
chr17:4,891,001-4,891,741
(GRCh37/hg19)

Genomic View for LOC101927979 Gene

Genes around LOC101927979 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927979 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927979 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927979 Gene

Proteins for LOC101927979 Gene

Post-translational modifications for LOC101927979 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927979 Gene

Domains & Families for LOC101927979 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927979 Gene

Function for LOC101927979 Gene

Phenotypes From GWAS Catalog for LOC101927979 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927979 Gene

Localization for LOC101927979 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927979 Gene

Pathways & Interactions for LOC101927979 Gene

SuperPathways for LOC101927979 Gene

No Data Available

Interacting Proteins for LOC101927979 Gene

Gene Ontology (GO) - Biological Process for LOC101927979 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927979 Gene

Drugs & Compounds for LOC101927979 Gene

No Compound Related Data Available

Transcripts for LOC101927979 Gene

mRNA/cDNA for LOC101927979 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927979 Gene

No ASD Table

Relevant External Links for LOC101927979 Gene

GeneLoc Exon Structure for
LOC101927979

Expression for LOC101927979 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927979 Gene

genes like me logo Genes that share expression patterns with LOC101927979: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927979 Gene

Orthologs for LOC101927979 Gene

Evolution for LOC101927979 Gene

ENSEMBL:
Gene Tree for LOC101927979 (if available)
TreeFam:
Gene Tree for LOC101927979 (if available)

No data available for Orthologs for LOC101927979 Gene

Paralogs for LOC101927979 Gene

No data available for Paralogs for LOC101927979 Gene

Variants for LOC101927979 Gene

Sequence variations from dbSNP and Humsavar for LOC101927979 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000191463 -- 4,986,832(+) A/C upstream_transcript_variant
rs1000453724 -- 4,987,266(+) G/A non_coding_transcript_variant
rs1001194001 -- 4,988,534(+) G/T non_coding_transcript_variant
rs1001225120 -- 4,988,222(+) A/T non_coding_transcript_variant
rs1002194829 -- 4,990,148(+) T/A non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927979 Gene

Disorders for LOC101927979 Gene

Additional Disease Information for LOC101927979

No disorders were found for LOC101927979 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927979 Gene

Publications for LOC101927979 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LOC101927979 Gene

Sources for LOC101927979 Gene

Content
Loading form....