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Aliases for LOC101927954 Gene
Data sources for LOC101927954 Gene:
Subcategory (RNA class) for LOC101927954 Gene
lncRNA
Aliases for LOC101927954 Gene
- Uncharacterized LOC101927954 (NCBI Entrez Gene)
- NONHSAG052863.2 (NONCODE)
- HSALNG0072806 (LncBook)
- Lnc-NINJ1-2 (LNCipedia)
External Ids for LOC101927954 Gene
- NCBI Entrez Gene: 101927954
Previous GeneCards Identifiers for LOC101927954 Gene
- GC09U901900
Summaries for LOC101927954 Gene
GeneCards Summary for LOC101927954 Gene
LOC101927954 (Uncharacterized LOC101927954) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC101927954 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927954 Gene
Genomics for LOC101927954 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC101927954 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH09J093014 | Enhancer | 0.2 | Ensembl | 250.7 | +0.7 | 743 | 0.4 | LOC101927954 RF00017-7714 FGD3 HSALNG0072805 SUSD3 | ||
| GH09J093010 | Enhancer | 0.6 | Ensembl dbSUPER | 0.7 | +3.9 | 3943 | 0.4 | ZNF48 NFIA ZNF143 | LOC101927954 RF00017-7714 HSALNG0072805 SUSD3 FGD3 | |
| GH09J093009 | Enhancer | 0.6 | Ensembl dbSUPER | 0.4 | +5.0 | 5043 | 1 | ZNF48 SCRT1 MNT | FGD3 ANKRD19P RF00017-7714 LOC101927954 HSALNG0072805 SUSD3 | |
| GH09J093020 | Enhancer | 0.3 | Ensembl dbSUPER | 0.7 | -4.6 | -4557 | 0.2 | SUSD3 LOC101927954 JX863074 FGD3 | ||
| GH09J093022 | Enhancer | 0.3 | dbSUPER | 0.4 | -8.1 | -8146 | 1.7 | ZNF623 | JX863074 FGD3 SUSD3 LOC101927954 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC101927954 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC101927954 Gene
Latest Assembly
- chr9:93,008,114-93,014,944
- (GRCh38/hg38)
- Size:
- 6,831 bases
- Orientation:
- Minus strand
Previous Assembly
- chr9:95,770,397-95,777,226
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 6,830 bases
- Orientation:
- Minus strand
Genomic View for LOC101927954 Gene
Genes around LOC101927954 on UCSC Golden Path with GeneCards custom track
LOC101927954 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 9q22.31 by Entrez Gene
LOC101927954 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC101927954 Gene
Proteins for LOC101927954 Gene
Post-translational modifications for LOC101927954 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LOC101927954 Gene
Domains & Families for LOC101927954 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927954 Gene
Function for LOC101927954 Gene
Phenotypes From GWAS Catalog for LOC101927954 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927954 Gene
Localization for LOC101927954 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927954 Gene
Transcripts for LOC101927954 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927954 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075DA9C_9606 | lncRNA | 3648 | 3 |
RefSeq: NR_121565, LNCipedia: lnc-NINJ1-2:1, NONCODE: NONHSAT133226.2, |
| URS00009C58B8_9606 | lncRNA | 265 | 2 |
LncBook: HSALNT0152194, NONCODE: NONHSAT221018.1, |
| URS0001BD3B01_9606 | lncRNA | 265 | 1 |
LncBook: HSALNT0152194, |
LOC101927954 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC101927954 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC101927954 Gene
- GeneLoc Exon Structure for
- LOC101927954
Expression for LOC101927954 Gene
No Expression Related Data Available
Gene Expression Assays for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927954 Gene
Orthologs for LOC101927954 Gene
No data available for Orthologs and Evolution for LOC101927954 Gene
Paralogs for LOC101927954 Gene
No data available for Paralogs for LOC101927954 Gene
Variants for LOC101927954 Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC101927954 Gene
| SNP ID | Clinical significance and condition | Chr 09 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs113001851 | Benign: not provided | 93,011,245(-) |
C/T NM_001083536.2(FGD3):c.1008C>T (p.Asn336=) |
SYNONYMOUS |
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2188240 | CNV | deletion | 18987734 |
| esv2738777 | CNV | deletion | 23290073 |
| esv2738778 | CNV | deletion | 23290073 |
| esv2738779 | CNV | deletion | 23290073 |
| esv3545134 | CNV | deletion | 23714750 |
| nsv1124449 | CNV | deletion | 24896259 |
| nsv526296 | CNV | loss | 19592680 |
| nsv6617 | CNV | insertion | 18451855 |
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927954 Gene
Disorders for LOC101927954 Gene
No disorders were found for LOC101927954 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927954 Gene
Publications for LOC101927954 Gene
No publications were found for LOC101927954 Gene.
No data available for Mastermind for LOC101927954 Gene
Products for LOC101927954 Gene
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- Custom Assay Services
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- Origene Custom Protein Services for LOC101927954
- Browse OriGene Inhibitory RNA Products For LOC101927954
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC101927954
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC101927954
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
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- Browse Sino Biological Assays
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC101927954
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC101927954
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC101927954
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC101927954
Sources for LOC101927954 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB