Aliases for LOC101927954 Gene

Data sources for LOC101927954 Gene:

Subcategory (RNA class) for LOC101927954 Gene


Aliases for LOC101927954 Gene

External Ids for LOC101927954 Gene

Previous GeneCards Identifiers for LOC101927954 Gene

  • GC09U901900

Summaries for LOC101927954 Gene

GeneCards Summary for LOC101927954 Gene

LOC101927954 (Uncharacterized LOC101927954) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927954 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927954 Gene

Genomics for LOC101927954 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101927954 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J093014 Enhancer 0.2 Ensembl 250.7 +0.7 743 0.4 LOC101927954 RF00017-7714 FGD3 HSALNG0072805 SUSD3
GH09J093010 Enhancer 0.6 Ensembl dbSUPER 0.7 +3.9 3943 0.4 ZNF48 NFIA ZNF143 LOC101927954 RF00017-7714 HSALNG0072805 SUSD3 FGD3
GH09J093009 Enhancer 0.6 Ensembl dbSUPER 0.4 +5.0 5043 1 ZNF48 SCRT1 MNT FGD3 ANKRD19P RF00017-7714 LOC101927954 HSALNG0072805 SUSD3
GH09J093020 Enhancer 0.3 Ensembl dbSUPER 0.7 -4.6 -4557 0.2 SUSD3 LOC101927954 JX863074 FGD3
GH09J093022 Enhancer 0.3 dbSUPER 0.4 -8.1 -8146 1.7 ZNF623 JX863074 FGD3 SUSD3 LOC101927954
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927954 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927954 Gene

Latest Assembly
6,831 bases
Minus strand

Previous Assembly
(GRCh37/hg19 by Entrez Gene)
6,830 bases
Minus strand

Genomic View for LOC101927954 Gene

Genes around LOC101927954 on UCSC Golden Path with GeneCards custom track
LOC101927954 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101927954 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927954 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927954 Gene

Proteins for LOC101927954 Gene

Post-translational modifications for LOC101927954 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927954 Gene

Domains & Families for LOC101927954 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927954 Gene

Function for LOC101927954 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927954 Gene

Localization for LOC101927954 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927954 Gene

Pathways & Interactions for LOC101927954 Gene

PathCards logo

SuperPathways for LOC101927954 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927954 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927954 Gene

Drugs & Compounds for LOC101927954 Gene

No Compound Related Data Available

Transcripts for LOC101927954 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927954 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DA9C_9606 lncRNA 3648 3

RefSeq: NR_121565,

LNCipedia: lnc-NINJ1-2:1,


URS00009C58B8_9606 lncRNA 265 2

LncBook: HSALNT0152194,


URS0001BD3B01_9606 lncRNA 265 1

LncBook: HSALNT0152194,

LOC101927954 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101927954 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927954 Gene

No ASD Table

Relevant External Links for LOC101927954 Gene

GeneLoc Exon Structure for

Expression for LOC101927954 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927954 Gene

Orthologs for LOC101927954 Gene

No data available for Orthologs and Evolution for LOC101927954 Gene

Paralogs for LOC101927954 Gene

No data available for Paralogs for LOC101927954 Gene

Variants for LOC101927954 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC101927954 Gene

SNP ID Clinical significance and condition Chr 09 pos Variation AA Info Type
rs113001851 Benign: not provided 93,011,245(-) C/T
NM_001083536.2(FGD3):c.1008C>T (p.Asn336=)

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101927954 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101927954 Gene

Variant ID Type Subtype PubMed ID
esv2188240 CNV deletion 18987734
esv2738777 CNV deletion 23290073
esv2738778 CNV deletion 23290073
esv2738779 CNV deletion 23290073
esv3545134 CNV deletion 23714750
nsv1124449 CNV deletion 24896259
nsv526296 CNV loss 19592680
nsv6617 CNV insertion 18451855

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927954 Gene

Disorders for LOC101927954 Gene

No disorders were found for LOC101927954 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927954 Gene

Publications for LOC101927954 Gene

No publications were found for LOC101927954 Gene.

No data available for Mastermind for LOC101927954 Gene

Products for LOC101927954 Gene

Sources for LOC101927954 Gene