Free for academic non-profit institutions. Other users need a Commercial license
LOC101927954 (Uncharacterized LOC101927954) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH09J093014 | Enhancer | 0.2 | Ensembl | 250.7 | +0.7 | 743 | 0.4 | LOC101927954 RF00017-7714 FGD3 HSALNG0072805 SUSD3 | ||
GH09J093010 | Enhancer | 0.6 | Ensembl dbSUPER | 0.7 | +3.9 | 3943 | 0.4 | ZNF48 NFIA ZNF143 | LOC101927954 RF00017-7714 HSALNG0072805 SUSD3 FGD3 | |
GH09J093009 | Enhancer | 0.6 | Ensembl dbSUPER | 0.4 | +5.0 | 5043 | 1 | ZNF48 SCRT1 MNT | FGD3 ANKRD19P RF00017-7714 LOC101927954 HSALNG0072805 SUSD3 | |
GH09J093020 | Enhancer | 0.3 | Ensembl dbSUPER | 0.7 | -4.6 | -4557 | 0.2 | SUSD3 LOC101927954 JX863074 FGD3 | ||
GH09J093022 | Enhancer | 0.3 | dbSUPER | 0.4 | -8.1 | -8146 | 1.7 | ZNF623 | JX863074 FGD3 SUSD3 LOC101927954 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS000075DA9C_9606 | lncRNA | 3648 | 3 |
RefSeq: NR_121565, LNCipedia: lnc-NINJ1-2:1, NONCODE: NONHSAT133226.2, |
URS00009C58B8_9606 | lncRNA | 265 | 2 |
LncBook: HSALNT0152194, NONCODE: NONHSAT221018.1, |
URS0001BD3B01_9606 | lncRNA | 265 | 1 |
LncBook: HSALNT0152194, |
SNP ID | Clinical significance and condition | Chr 09 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs113001851 | Benign: not provided | 93,011,245(-) |
C/T NM_001083536.2(FGD3):c.1008C>T (p.Asn336=) |
SYNONYMOUS |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv2188240 | CNV | deletion | 18987734 |
esv2738777 | CNV | deletion | 23290073 |
esv2738778 | CNV | deletion | 23290073 |
esv2738779 | CNV | deletion | 23290073 |
esv3545134 | CNV | deletion | 23714750 |
nsv1124449 | CNV | deletion | 24896259 |
nsv526296 | CNV | loss | 19592680 |
nsv6617 | CNV | insertion | 18451855 |
No disorders were found for LOC101927954 Gene.
No publications were found for LOC101927954 Gene.