Aliases for LOC101927908 Gene

Subcategory (RNA class) for LOC101927908 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC101927908 Gene

  • Uncharacterized LOC101927908 3
  • Novel Transcript 5
  • NONHSAG042158 92
  • HSALNG0046413 167
  • Lnc-PANK3-10 168
  • AC091819.1 5

External Ids for LOC101927908 Gene

Previous GeneCards Identifiers for LOC101927908 Gene

  • GC05U901897
  • GC05M166592

Summaries for LOC101927908 Gene

GeneCards Summary for LOC101927908 Gene

LOC101927908 (Uncharacterized LOC101927908) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927908 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927908 Gene

Genomics for LOC101927908 Gene

GeneHancer (GH) Regulatory Elements for LOC101927908 Gene

Promoters and enhancers for LOC101927908 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J167167 Enhancer 0.3 Ensembl 500.7 +1.1 1101 0.2 STAT3 LOC101927908 piR-56480-049 TENM2
GH05J167173 Enhancer 0.2 Ensembl 0.7 -4.8 -4799 0.4 ENSG00000254365 LOC101927908 KY945947 TENM2
GH05J167208 Enhancer 0.3 Ensembl 0.3 -40.5 -40499 0.6 TEAD4 JUN ENSG00000254365 LOC101927908 KY945947 TENM2
GH05J167283 Enhancer 0.6 Ensembl ENCODE 0.1 -116.2 -116193 1.3 FOS FOSL2 CEBPB STAT3 JUND STAT1 KY945947 LOC101927908 TENM2
GH05J167244 Enhancer 0.4 Ensembl 0.2 -76.2 -76199 0.4 CTCF SMC3 RAD21 ZNF143 TENM2 ENSG00000254365 KY945947 LOC101927908
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927908 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927908 Gene

Genomic Locations for LOC101927908 Gene
chr5:167,164,934-167,168,402
(GRCh38/hg38)
Size:
3,469 bases
Orientation:
Minus strand
chr5:166,591,939-166,595,406
(GRCh37/hg19)
Size:
3,468 bases
Orientation:
Minus strand

Genomic View for LOC101927908 Gene

Genes around LOC101927908 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927908 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927908 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927908 Gene

Proteins for LOC101927908 Gene

Post-translational modifications for LOC101927908 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927908 Gene

Domains & Families for LOC101927908 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927908 Gene

Function for LOC101927908 Gene

Phenotypes From GWAS Catalog for LOC101927908 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927908 Gene

Localization for LOC101927908 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927908 Gene

Pathways & Interactions for LOC101927908 Gene

PathCards logo

SuperPathways for LOC101927908 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101927908 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927908 Gene

Drugs & Compounds for LOC101927908 Gene

No Compound Related Data Available

Transcripts for LOC101927908 Gene

mRNA/cDNA for LOC101927908 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927908 Gene

No ASD Table

Relevant External Links for LOC101927908 Gene

GeneLoc Exon Structure for
LOC101927908

Expression for LOC101927908 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927908 Gene

genes like me logo Genes that share expression patterns with LOC101927908: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927908 Gene

Orthologs for LOC101927908 Gene

Evolution for LOC101927908 Gene

ENSEMBL:
Gene Tree for LOC101927908 (if available)
TreeFam:
Gene Tree for LOC101927908 (if available)

No data available for Orthologs for LOC101927908 Gene

Paralogs for LOC101927908 Gene

No data available for Paralogs for LOC101927908 Gene

Variants for LOC101927908 Gene

Additional dbSNP identifiers (rs#s) for LOC101927908 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927908 Gene

Disorders for LOC101927908 Gene

No disorders were found for LOC101927908 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927908 Gene

Publications for LOC101927908 Gene

No publications were found for LOC101927908 Gene.

No data available for Mastermind for LOC101927908 Gene

Products for LOC101927908 Gene

Sources for LOC101927908 Gene