Aliases for LOC101927845 Gene

Subcategory (RNA class) for LOC101927845 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC101927845 Gene

  • Uncharacterized LOC101927845 3
  • Novel Transcript 5
  • NONHSAG051360 92
  • HSALNG0068830 167
  • Lnc-KHDRBS3-3 168
  • AC103764.1 5

External Ids for LOC101927845 Gene

Previous GeneCards Identifiers for LOC101927845 Gene

  • GC08U901688

Summaries for LOC101927845 Gene

GeneCards Summary for LOC101927845 Gene

LOC101927845 (Uncharacterized LOC101927845) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927845 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927845 Gene

Genomics for LOC101927845 Gene

GeneHancer (GH) Regulatory Elements for LOC101927845 Gene

Promoters and enhancers for LOC101927845 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J134849 Enhancer 0.3 ENCODE 500.7 -0.8 -822 0.2 GATA3 LOC101927845 NCRNA00250
GH08J134837 Enhancer 0.9 Ensembl ENCODE 0.4 -11.2 -11175 2.5 ATF2 MXI1 OSR2 WT1 CREB1 ZNF316 NFIC MAFF ZNF263 MAFK NCRNA00250 ZFAT MIR30B MIR30D LOC101927845
GH08J134840 Enhancer 0.7 Ensembl ENCODE 0.4 -9.1 -9060 1.5 NR2F2 JUND MITF RXRA HNF4A NFIA TCF7L2 USF2 SOX5 SP1 ZFAT MIR30B NCRNA00250 LOC101927845
GH08J134864 Enhancer 0.7 Ensembl ENCODE 0.4 +16.4 16375 2.9 FOS ESRRA NR3C1 FOSL2 HLF RXRA FOXA1 SP1 CEBPB STAT3 HSALNG0068831 MIR30B lnc-ZFAT-6 LOC101927845
GH08J134843 Enhancer 0.6 Ensembl 0.4 -6.1 -6134 0.4 CTCF REST TGIF2 SMC3 RAD21 SMAD4 XRCC5 HBP1 YY1 ZNF143 NCRNA00250 ZFAT MIR30B ENSG00000259820 LOC101927845
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927845 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927845 Gene

Genomic Locations for LOC101927845 Gene
chr8:134,849,935-134,881,900
(GRCh38/hg38)
Size:
31,966 bases
Orientation:
Plus strand
chr8:135,862,178-135,894,142
(GRCh37/hg19)
Size:
31,965 bases
Orientation:
Plus strand

Genomic View for LOC101927845 Gene

Genes around LOC101927845 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927845 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927845 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927845 Gene

Proteins for LOC101927845 Gene

Post-translational modifications for LOC101927845 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927845 Gene

Domains & Families for LOC101927845 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927845 Gene

Function for LOC101927845 Gene

Phenotypes From GWAS Catalog for LOC101927845 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927845 Gene

Localization for LOC101927845 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927845 Gene

Pathways & Interactions for LOC101927845 Gene

PathCards logo

SuperPathways for LOC101927845 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101927845 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927845 Gene

Drugs & Compounds for LOC101927845 Gene

No Compound Related Data Available

Transcripts for LOC101927845 Gene

mRNA/cDNA for LOC101927845 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927845 Gene

No ASD Table

Relevant External Links for LOC101927845 Gene

GeneLoc Exon Structure for
LOC101927845

Expression for LOC101927845 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927845 Gene

genes like me logo Genes that share expression patterns with LOC101927845: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927845 Gene

Orthologs for LOC101927845 Gene

Evolution for LOC101927845 Gene

ENSEMBL:
Gene Tree for LOC101927845 (if available)
TreeFam:
Gene Tree for LOC101927845 (if available)

No data available for Orthologs for LOC101927845 Gene

Paralogs for LOC101927845 Gene

No data available for Paralogs for LOC101927845 Gene

Variants for LOC101927845 Gene

Additional dbSNP identifiers (rs#s) for LOC101927845 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101927845 Gene

Variant ID Type Subtype PubMed ID
dgv4247e59 CNV tandem duplication 20981092
esv3331414 CNV duplication 20981092
esv3398773 CNV duplication 20981092
esv34017 CNV loss 18971310
nsv1032148 CNV gain 25217958
nsv397734 CNV insertion 16902084

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927845 Gene

Disorders for LOC101927845 Gene

No disorders were found for LOC101927845 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927845 Gene

Publications for LOC101927845 Gene

  1. ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample. (PMID: 24277619) Quillen EE … Gelernter J (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2014) 3 54
  2. Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci. (PMID: 24001895) Kelly TN … He J (Hypertension (Dallas, Tex. : 1979) 2013) 3 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LOC101927845 Gene

Products for LOC101927845 Gene

Sources for LOC101927845 Gene