Aliases for LOC101927822 Gene

Subcategory (RNA class) for LOC101927822 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC101927822 Gene

  • Uncharacterized LOC101927822 3
  • Novel Transcript 5
  • NONHSAG051346 92
  • HSALNG0068775 167
  • Lnc-WISP1-4 168
  • AC110741.1 5

External Ids for LOC101927822 Gene

Previous GeneCards Identifiers for LOC101927822 Gene

  • GC08U901827

Summaries for LOC101927822 Gene

GeneCards Summary for LOC101927822 Gene

LOC101927822 (Uncharacterized LOC101927822) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927822 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927822 Gene

Genomics for LOC101927822 Gene

GeneHancer (GH) Regulatory Elements for LOC101927822 Gene

Promoters and enhancers for LOC101927822 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J133882 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 500.7 -1.7 -1696 4.4 ZNF217 CTCF FOS RAD21 TRIM22 GATAD2B SMC3 DEK ZNF207 NONO LOC101927822 ST3GAL1 HSALNG0068772
GH08J133890 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +10.8 10805 15.4 EP300 FOS GATAD2B TCF12 RXRA MEF2B SPI1 ZNF8 FOXA1 EBF1 ST3GAL1 HSALNG0068776 LOC101927822
GH08J133907 Enhancer 0.7 Ensembl dbSUPER 0.4 +22.3 22305 4 POLR2A BATF NFIB RAD21 SMARCA4 JUNB CTCF HSALNG0068776 LOC101927822
GH08J133905 Enhancer 0.6 FANTOM5 dbSUPER 0.4 +19.3 19259 0.2 FOS CREB1 STAT3 ST3GAL1 HSALNG0068776 LOC101927822
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927822 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927822 Gene

Genomic Locations for LOC101927822 Gene
chr8:133,886,496-133,902,407
(GRCh38/hg38)
Size:
15,912 bases
Orientation:
Plus strand
chr8:134,898,739-134,914,650
(GRCh37/hg19)
Size:
15,912 bases
Orientation:
Plus strand

Genomic View for LOC101927822 Gene

Genes around LOC101927822 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927822 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927822 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927822 Gene

Proteins for LOC101927822 Gene

Post-translational modifications for LOC101927822 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927822 Gene

Domains & Families for LOC101927822 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927822 Gene

Function for LOC101927822 Gene

Phenotypes From GWAS Catalog for LOC101927822 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927822 Gene

Localization for LOC101927822 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927822 Gene

Pathways & Interactions for LOC101927822 Gene

PathCards logo

SuperPathways for LOC101927822 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101927822 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927822 Gene

Drugs & Compounds for LOC101927822 Gene

No Compound Related Data Available

Transcripts for LOC101927822 Gene

mRNA/cDNA for LOC101927822 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927822 Gene

No ASD Table

Relevant External Links for LOC101927822 Gene

GeneLoc Exon Structure for
LOC101927822

Expression for LOC101927822 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927822 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927822

genes like me logo Genes that share expression patterns with LOC101927822: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927822 Gene

Orthologs for LOC101927822 Gene

Evolution for LOC101927822 Gene

ENSEMBL:
Gene Tree for LOC101927822 (if available)
TreeFam:
Gene Tree for LOC101927822 (if available)

No data available for Orthologs for LOC101927822 Gene

Paralogs for LOC101927822 Gene

No data available for Paralogs for LOC101927822 Gene

Variants for LOC101927822 Gene

Additional dbSNP identifiers (rs#s) for LOC101927822 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101927822 Gene

Variant ID Type Subtype PubMed ID
esv2660261 CNV deletion 23128226
nsv612331 CNV gain 21841781
nsv6406 CNV deletion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927822 Gene

Disorders for LOC101927822 Gene

No disorders were found for LOC101927822 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927822 Gene

Publications for LOC101927822 Gene

No publications were found for LOC101927822 Gene.

No data available for Mastermind for LOC101927822 Gene

Products for LOC101927822 Gene

Sources for LOC101927822 Gene