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Aliases for LOC101927817 Gene

Subcategory (RNA class) for LOC101927817 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC101927817 Gene

  • Uncharacterized LOC101927817 3

External Ids for LOC101927817 Gene

Previous GeneCards Identifiers for LOC101927817 Gene

  • GC16U901583

Summaries for LOC101927817 Gene

GeneCards Summary for LOC101927817 Gene

LOC101927817 (Uncharacterized LOC101927817) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927817 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927817 Gene

Genomics for LOC101927817 Gene

GeneHancer (GH) Regulatory Elements for LOC101927817 Gene

Promoters and enhancers for LOC101927817 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I089430 Enhancer 1.2 Ensembl ENCODE dbSUPER 550.8 +0.6 596 2.1 PKNOX1 KLF1 MXI1 CLOCK FOXA2 SAP130 SIN3A RARA ZFHX2 POLR2A LOC101927817 RNU6-430P ANKRD11
GH16I089421 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.9 -7903 2.4 PKNOX1 FOXA2 SMAD1 ARNT ARID4B IRF4 RAD21 ZNF48 RARA SLC30A9 ENSG00000261692 ANKRD11 TCF25 ZNF276 SPATA2L VPS9D1 LOC101927817
GH16I089440 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.0 11965 5.8 PKNOX1 CLOCK FOXA2 NEUROD1 SIN3A DMAP1 ZNF48 RUNX3 NFIL3 ATF4 GC16P089443 RNU6-430P DBNDD1 SPG7 RPL13 ZNF778 TUBB3 DEF8 LOC101927817 ANKRD11
GH16I089425 Enhancer 0.7 Ensembl dbSUPER 0.8 -4.9 -4918 0.4 IKZF1 JUNB EBF1 ETV6 BATF PRDM1 ENSG00000261692 LOC101927817 ANKRD11
GH16I089435 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +5.0 5048 1.7 HDGF PKNOX1 NFATC3 ASH1L EBF1 RELA ZNF316 POLR2A NFYB ETV6 SPG7 LOC101927817 RNU6-430P ANKRD11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101927817 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927817 Gene

Genomic Locations for LOC101927817 Gene
chr16:89,430,918-89,454,494
(GRCh38/hg38)
Size:
23,577 bases
Orientation:
Plus strand

Genomic View for LOC101927817 Gene

Genes around LOC101927817 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927817 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927817 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927817 Gene

Proteins for LOC101927817 Gene

Post-translational modifications for LOC101927817 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927817 Gene

Domains & Families for LOC101927817 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927817 Gene

Function for LOC101927817 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927817 Gene

Localization for LOC101927817 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927817 Gene

Pathways & Interactions for LOC101927817 Gene

SuperPathways for LOC101927817 Gene

No Data Available

Interacting Proteins for LOC101927817 Gene

Gene Ontology (GO) - Biological Process for LOC101927817 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927817 Gene

Drugs & Compounds for LOC101927817 Gene

No Compound Related Data Available

Transcripts for LOC101927817 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927817 Gene

No ASD Table

Relevant External Links for LOC101927817 Gene

GeneLoc Exon Structure for
LOC101927817

No data available for mRNA/cDNA for LOC101927817 Gene

Expression for LOC101927817 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927817 Gene

Orthologs for LOC101927817 Gene

No data available for Orthologs and Evolution for LOC101927817 Gene

Paralogs for LOC101927817 Gene

No data available for Paralogs for LOC101927817 Gene

Variants for LOC101927817 Gene

Sequence variations from dbSNP and Humsavar for LOC101927817 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000061492 -- 89,443,762(+) G/C intron_variant
rs1000134610 -- 89,443,606(+) T/C intron_variant
rs1000282116 -- 89,451,475(+) G/C intron_variant
rs1000323283 -- 89,432,405(+) A/G intron_variant
rs1000399443 -- 89,453,107(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927817 Gene

Variant ID Type Subtype PubMed ID
dgv555e214 CNV loss 21293372
esv2758670 CNV gain 17122850
esv3639579 CNV gain 21293372
nsv1063483 CNV gain 25217958
nsv1109037 CNV deletion 24896259
nsv1138486 CNV deletion 24896259
nsv428331 CNV gain+loss 18775914
nsv471118 CNV gain 18288195
nsv482951 CNV loss 15286789
nsv512455 CNV loss 21212237
nsv573735 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927817 Gene

Disorders for LOC101927817 Gene

Additional Disease Information for LOC101927817

No disorders were found for LOC101927817 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927817 Gene

Publications for LOC101927817 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC101927817 Gene

Sources for LOC101927817 Gene

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