LOC101927789 Gene (Pseudogene)

FAU, Ubiquitin Like And Ribosomal Protein S30 Fusion Pseudogene

GC11P065582
GIFtS:
7

Aliases for LOC101927789 Gene

Aliases for LOC101927789 Gene

  • FAU, Ubiquitin Like And Ribosomal Protein S30 Fusion Pseudogene 3
  • Putative Ubiquitin-Like Protein FUBI-Like Protein ENSP00000310146 3

External Ids for LOC101927789 Gene

Previous GeneCards Identifiers for LOC101927789 Gene

  • GC11U902122
  • GC11P065225
  • GC11P065455
  • GC11P065466
  • GC11P065552
  • GC11P065559
  • GC11P065475
  • GC11P065483
  • GC11P065498
  • GC11P065509
  • GC11P065517
  • GC11P065528
  • GC11P065535
  • GC11P065545

Summaries for LOC101927789 Gene

GeneCards Summary for LOC101927789 Gene

LOC101927789 (FAU, Ubiquitin Like And Ribosomal Protein S30 Fusion Pseudogene) is a Pseudogene.

Additional gene information for LOC101927789 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927789 Gene

Genomics for LOC101927789 Gene

GeneHancer (GH) Regulatory Elements for LOC101927789 Gene

Promoters and enhancers for LOC101927789 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J065452 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.6 565 5.3 SP1 ZBTB40 CTCF SREBF1 SMARCE1 POLR2A CC2D1A HLF L3MBTL2 MNT ENSG00000173727 LOC101927789 lnc-FRMD8-4 NEAT1 KAT5 ATG2A AP5B1 FRMD8 SLC25A45 MALAT1
GH11J065459 Enhancer 0.7 ENCODE 0.4 +5.3 5284 0.2 POU5F1 SP1 CBFA2T2 MLLT1 IKZF1 IKZF2 LEF1 POLR2A CBFB EED ENSG00000173727 RF00017-943 lnc-FRMD8-4 LOC101927789 TALAM1-001 L13304-005 L13715-004
GH11J065465 Enhancer 0.3 Ensembl 0.4 +11.8 11780 0.8 RUNX3 piR-43105-090 ENSG00000173727 RF00017-943 lnc-FRMD8-4 LOC101927789 TALAM1-001 L13304-005 L13715-004
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927789 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927789 Gene

Genomic Locations for LOC101927789 Gene
chr11:65,454,421-65,466,720
(GRCh38/hg38)
Size:
12,300 bases
Orientation:
Plus strand
chr11:65,222,728-65,234,028
(GRCh37/hg19)
Size:
11,301 bases
Orientation:
Plus strand

Genomic View for LOC101927789 Gene

Genes around LOC101927789 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927789 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927789 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101927789 Gene

Proteins for LOC101927789 Gene

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Post-translational modifications for LOC101927789 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927789 Gene

Domains & Families for LOC101927789 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927789 Gene

Function for LOC101927789 Gene

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  2. CRISPR
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  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927789 Gene

Localization for LOC101927789 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927789 Gene

Pathways & Interactions for LOC101927789 Gene

PathCards logo

SuperPathways for LOC101927789 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927789 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927789 Gene

Drugs & Compounds for LOC101927789 Gene

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No Compound Related Data Available

Transcripts for LOC101927789 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
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Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927789 Gene

No ASD Table

Relevant External Links for LOC101927789 Gene

GeneLoc Exon Structure for
LOC101927789

No data available for mRNA/cDNA for LOC101927789 Gene

Expression for LOC101927789 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927789 Gene

mRNA expression in normal human tissues for LOC101927789 Gene
mRNA expression by GTEx for LOC101927789 Gene
genes like me logo Genes that share expression patterns with LOC101927789: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927789 Gene

Orthologs for LOC101927789 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC101927789 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia LOC451324 32
  • 96.3 (n)
Species where no ortholog for LOC101927789 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

No data available for Evolution for LOC101927789 Gene

Paralogs for LOC101927789 Gene

(1) SIMAP similar genes for LOC101927789 Gene using alignment to 1 proteins:

  • I3L084_HUMAN
genes like me logo Genes that share paralogs with LOC101927789: view

No data available for Paralogs for LOC101927789 Gene

Variants for LOC101927789 Gene

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Sequence variations from dbSNP and Humsavar for LOC101927789 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000018329 -- 65,465,754(+) G/A genic_downstream_transcript_variant, intron_variant
rs1000240879 -- 65,454,636(+) C/A upstream_transcript_variant
rs1000329454 -- 65,467,262(+) C/T downstream_transcript_variant
rs1000465714 -- 65,460,695(+) A/G genic_downstream_transcript_variant, intron_variant
rs1000474457 -- 65,465,570(+) C/G genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927789 Gene

Disorders for LOC101927789 Gene

No disorders were found for LOC101927789 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927789 Gene

Publications for LOC101927789 Gene

  1. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor TD … Sakaki Y (Nature 2006) 3 56
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 56

No data available for External Links for LOC101927789 Gene

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