Aliases for LOC101927702 Gene

Subcategory (RNA class) for LOC101927702 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC101927702 Gene

  • Uncharacterized LOC101927702 3
  • Novel Transcript, Antisense To PPM1A 5
  • CTD-2184C24.2 3
  • NONHSAG015150 92
  • HSALNG0101699 167
  • HSALNG0101700 167
  • Lnc-DHRS7-1 168
  • AL157756.1 5

External Ids for LOC101927702 Gene

Previous GeneCards Identifiers for LOC101927702 Gene

  • GC14U901421
  • GC14M060707

Summaries for LOC101927702 Gene

GeneCards Summary for LOC101927702 Gene

LOC101927702 (Uncharacterized LOC101927702) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927702 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927702 Gene

Genomics for LOC101927702 Gene

GeneHancer (GH) Regulatory Elements for LOC101927702 Gene

Promoters and enhancers for LOC101927702 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J060247 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -0.1 -57 5.5 ZNF217 EP300 TCF12 NRF1 POLR2G USF1 SP1 GTF2E2 PHF8 JUND PPM1A LOC101927702 NONHSAG015151.2 lnc-PCNX4-3
GH14J060640 Promoter/Enhancer 2.7 VISTA EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 12.3 -400.4 -400366 19.3 FOXK2 CTCF ZSCAN5C SIN3A POLR2G USF1 PHF8 TEAD4 ZFX ZNF639 MIR9718-001 SIX1 TRMT5 C14orf39 SLC38A6 PCNX4 LOC101927702 SIX4 TMEM30B MNAT1
GH14J060330 Promoter/Enhancer 1.4 ENCODE CraniofacialAtlas dbSUPER 10.8 -81.9 -81916 1.7 CTCF SIN3A NRF1 CLOCK REST MYC RAD21 TRIM22 POLR2A SMC3 C14orf39 SCOCP1 LOC101927702 PPM1A L3HYPDH piR-38352-174 LINC02322
GH14J060204 Enhancer 1.2 FANTOM5 Ensembl ENCODE 11.4 +45.1 45078 1.8 SP1 EP300 RELA MEF2C POLR2A BCL11A TCF12 CREB1 ZNF316 CBFB PPM1A LOC101927702 TRMT5 L3HYPDH DHRS7 HSALNG0101694 lnc-PCNX4-1
GH14J060269 Enhancer 0.9 Ensembl ENCODE 12.3 -23.7 -23722 11.8 ZNF217 USF1 KLF4 TEAD1 CTBP1 RBM25 CEBPB MEF2B ZBTB33 ETS1 PPM1A LOC101927702 PCNX4 CCDC175 DHRS7 NONHSAG015151.2 lnc-PCNX4-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927702 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927702 Gene

Genomic Locations for LOC101927702 Gene
chr14:60,240,121-60,249,778
(GRCh38/hg38)
Size:
9,658 bases
Orientation:
Minus strand
chr14:60,706,839-60,715,483
(GRCh37/hg19)
Size:
8,645 bases
Orientation:
Minus strand

Genomic View for LOC101927702 Gene

Genes around LOC101927702 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927702 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927702 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927702 Gene

Proteins for LOC101927702 Gene

Post-translational modifications for LOC101927702 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927702 Gene

Domains & Families for LOC101927702 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927702 Gene

Function for LOC101927702 Gene

Phenotypes From GWAS Catalog for LOC101927702 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927702 Gene

Localization for LOC101927702 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927702 Gene

Pathways & Interactions for LOC101927702 Gene

PathCards logo

SuperPathways for LOC101927702 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101927702 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927702 Gene

Drugs & Compounds for LOC101927702 Gene

No Compound Related Data Available

Transcripts for LOC101927702 Gene

mRNA/cDNA for LOC101927702 Gene

17 RNACentral transcripts :
2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
4 LncBook transcripts :
17 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927702 Gene

No ASD Table

Relevant External Links for LOC101927702 Gene

GeneLoc Exon Structure for
LOC101927702

Expression for LOC101927702 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927702 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927702 Gene

This gene is overexpressed in Testis (x33.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927702

genes like me logo Genes that share expression patterns with LOC101927702: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927702 Gene

Orthologs for LOC101927702 Gene

Evolution for LOC101927702 Gene

ENSEMBL:
Gene Tree for LOC101927702 (if available)
TreeFam:
Gene Tree for LOC101927702 (if available)

No data available for Orthologs for LOC101927702 Gene

Paralogs for LOC101927702 Gene

No data available for Paralogs for LOC101927702 Gene

Variants for LOC101927702 Gene

Additional dbSNP identifiers (rs#s) for LOC101927702 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927702 Gene

Disorders for LOC101927702 Gene

No disorders were found for LOC101927702 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927702 Gene

Publications for LOC101927702 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LOC101927702 Gene

Products for LOC101927702 Gene

Sources for LOC101927702 Gene