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Aliases for LOC101927699 Gene

Subcategory (RNA class) for LOC101927699 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101927699 Gene

  • Uncharacterized LOC101927699 3

External Ids for LOC101927699 Gene

Previous GeneCards Identifiers for LOC101927699 Gene

  • GC10U901776
  • GC10P046954

Summaries for LOC101927699 Gene

GeneCards Summary for LOC101927699 Gene

LOC101927699 (Uncharacterized LOC101927699) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927699 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927699 Gene

Genomics for LOC101927699 Gene

GeneHancer (GH) Regulatory Elements for LOC101927699 Gene

Promoters and enhancers for LOC101927699 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J046596 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 600.7 +0.4 394 2 CC2D1A CTCF MNT MLLT1 ZNF121 ZSCAN21 CDC5L MCM2 ZNF24 MAFK ENSG00000229227 ENSG00000231187 LOC101927699 WASHC2C AGAP4 PARGP1 PIR41118
GH10J046586 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.4 +11.4 11376 0.8 CC2D1A CTCF CEBPG ZNF384 CDC5L TFE3 PPARG SP5 EGR1 ARID2 PIR41118 SYT15 ENSG00000229227 ENSG00000231187 LOC101927699
GH10J046594 Enhancer 0.5 ENCODE dbSUPER 0.7 +3.4 3371 1.1 MCM7 ENSG00000229227 ENSG00000231187 LOC101927699 PIR41118 SYT15
GH10J046589 Enhancer 0.7 ENCODE 0.4 +8.6 8575 0.9 MCM2 KLF14 PRDM1 CREB1 RNF2 YBX1 MCM7 JUND FOXA2 PKNOX1 PIR41118 LOC101927699 ENSG00000229227 ENSG00000231187 SYT15
GH10J046582 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 +15.3 15344 0.4 ATF1 CREM SYT15 PIR41118 LOC101927699 ENSG00000231187
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927699 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927699 Gene

Genomic Locations for LOC101927699 Gene
chr10:46,582,163-46,598,145
(GRCh38/hg38)
Size:
15,983 bases
Orientation:
Minus strand
chr10:46,951,472-46,966,835
(GRCh37/hg19)
Size:
15,364 bases
Orientation:
Plus strand

Genomic View for LOC101927699 Gene

Genes around LOC101927699 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927699 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927699 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927699 Gene

Proteins for LOC101927699 Gene

Post-translational modifications for LOC101927699 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927699 Gene

Domains & Families for LOC101927699 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927699 Gene

Function for LOC101927699 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927699 Gene

Localization for LOC101927699 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927699 Gene

Pathways & Interactions for LOC101927699 Gene

PathCards logo

SuperPathways for LOC101927699 Gene

No Data Available

Interacting Proteins for LOC101927699 Gene

Gene Ontology (GO) - Biological Process for LOC101927699 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927699 Gene

Drugs & Compounds for LOC101927699 Gene

No Compound Related Data Available

Transcripts for LOC101927699 Gene

mRNA/cDNA for LOC101927699 Gene

(5) Additional mRNA sequences :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927699 Gene

No ASD Table

Relevant External Links for LOC101927699 Gene

GeneLoc Exon Structure for
LOC101927699

Expression for LOC101927699 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927699 Gene

mRNA expression in normal human tissues for LOC101927699 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927699 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x5.6), Brain - Cortex (x4.7), Brain - Frontal Cortex (BA9) (x4.5), Brain - Amygdala (x4.3), and Brain - Hippocampus (x4.1).
genes like me logo Genes that share expression patterns with LOC101927699: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927699 Gene

Orthologs for LOC101927699 Gene

No data available for Orthologs and Evolution for LOC101927699 Gene

Paralogs for LOC101927699 Gene

No data available for Paralogs for LOC101927699 Gene

Variants for LOC101927699 Gene

Sequence variations from dbSNP and Humsavar for LOC101927699 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs10545241 -- 46,594,607(-) GACGAC/GAC intron_variant
rs10661997 -- 46,585,135(-) G/GGTG intron_variant
rs10673963 -- 46,599,896(-) AAAAAAAAAAAAAA/AAAAAAAAAAAAA/AAAAAAAAAAAAAAA/AAAAAAAAAAAAAAAA/AAAAAAAAAAAAAAAAA/AAAAAAAAAAAAAAAAAA/AAAAAAAAAAAAAAAAAAA upstream_transcript_variant
rs10712659 -- 46,586,842(-) AAAAAAAAAAAAAA/AAAAAAAAAAAA/AAAAAAAAAAAAA/AAAAAAAAAAAAAAA/AAAAAAAAAAAAAAAAAA intron_variant
rs111596780 -- 46,586,805(-) A/C/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927699 Gene

Disorders for LOC101927699 Gene

No disorders were found for LOC101927699 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927699 Gene

Publications for LOC101927699 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

No data available for External Links for LOC101927699 Gene

Products for LOC101927699 Gene

Sources for LOC101927699 Gene

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