LOC101927690 Gene (RNA Gene)

Uncharacterized LOC101927690

GC14P056516
GIFtS:
9
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Aliases for LOC101927690 Gene

Subcategory (RNA class) for LOC101927690 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101927690 Gene

  • Uncharacterized LOC101927690 3
  • Novel Transcript 5
  • NONHSAG015063.2 91
  • HSALNG0101526 164
  • Lnc-PELI2-7 165
  • AL355103.1 5

External Ids for LOC101927690 Gene

Previous GeneCards Identifiers for LOC101927690 Gene

  • GC14U901386
  • GC14P056982

Summaries for LOC101927690 Gene

GeneCards Summary for LOC101927690 Gene

LOC101927690 (Uncharacterized LOC101927690) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927690 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927690 Gene

Genomics for LOC101927690 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC101927690 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH14J056513 Enhancer 0.3 UCNEbase 600.7 -0.3 -257 0.5 LOC101927690 lnc-OTX2-2 lnc-PELI2-6 TMEM260 OTX2
GH14J056502 Enhancer 0.2 Ensembl 6.5 -12.0 -12031 0.6 lnc-PELI2-6 LOC101927690 TMEM260 OTX2
GH14J056525 Enhancer 0.4 Ensembl ENCODE 0.4 +11.1 11070 0.8 YY1 lnc-OTX2-2 LOC101927690 RF00994-325 TMEM260 OTX2
GH14J056500 Enhancer 0.2 Ensembl 0.4 -13.0 -13030 1 lnc-PELI2-6 LOC101927690 TMEM260 OTX2
GH14J056528 Enhancer 0.2 Ensembl 0.4 +14.8 14770 0.6 RF00994-325 LOC101927690 lnc-OTX2-2 TMEM260 OTX2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927690 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927690 Gene

Genomic Locations for LOC101927690 Gene
chr14:56,514,331-56,551,309
(GRCh38/hg38)
Size:
36,979 bases
Orientation:
Plus strand
chr14:56,981,049-57,018,027
(GRCh37/hg19)
Size:
36,979 bases
Orientation:
Plus strand

Genomic View for LOC101927690 Gene

Genes around LOC101927690 on UCSC Golden Path with GeneCards custom track
LOC101927690 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101927690 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927690 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101927690 Gene

Proteins for LOC101927690 Gene

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Post-translational modifications for LOC101927690 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927690 Gene

Domains & Families for LOC101927690 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927690 Gene

Function for LOC101927690 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927690 Gene

Localization for LOC101927690 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927690 Gene

Pathways & Interactions for LOC101927690 Gene

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SuperPathways for LOC101927690 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927690 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927690 Gene

Drugs & Compounds for LOC101927690 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC101927690 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927690 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000025DA15_9606 lncRNA 2226 4

Ensembl: ENST00000557246 (view in UCSC) ,

LncBook: HSALNT0211475,

LNCipedia: lnc-PELI2-7:1,

NONCODE: NONHSAT037052.2,

URS0000A76441_9606 lncRNA 2226 1

RefSeq: NR_135241,

URS00009B3282_9606 lncRNA 2204 2

LncBook: HSALNT0211476,

NONCODE: NONHSAT168494.1,

URS00008BCBC5_9606 lncRNA 2204 1

LNCipedia: lnc-PELI2-7:2,

LOC101927690 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101927690 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927690 Gene

No ASD Table

Relevant External Links for LOC101927690 Gene

GeneLoc Exon Structure for
LOC101927690

Expression for LOC101927690 Gene

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  1. Primer
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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927690 Gene

mRNA expression in normal human tissues for LOC101927690 Gene
mRNA expression by GTEx for LOC101927690 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927690 Gene

This gene is overexpressed in Testis (x7.2), Brain - Hippocampus (x5.1), and Brain - Hypothalamus (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927690

genes like me logo Genes that share expression patterns with LOC101927690: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927690 Gene

Orthologs for LOC101927690 Gene

Evolution for LOC101927690 Gene

ENSEMBL:
Gene Tree for LOC101927690 (if available)
TreeFam:
Gene Tree for LOC101927690 (if available)

No data available for Orthologs for LOC101927690 Gene

Paralogs for LOC101927690 Gene

No data available for Paralogs for LOC101927690 Gene

Variants for LOC101927690 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC101927690 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927690 Gene

Disorders for LOC101927690 Gene

No disorders were found for LOC101927690 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927690 Gene

Publications for LOC101927690 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC101927690 Gene

Products for LOC101927690 Gene

Sources for LOC101927690 Gene