Aliases for LOC101927604 Gene

Subcategory (RNA class) for LOC101927604 Gene

lncRNA

Quality Score for this RNA gene is

11

Aliases for LOC101927604 Gene

  • Uncharacterized LOC101927604 3

External Ids for LOC101927604 Gene

Previous GeneCards Identifiers for LOC101927604 Gene

  • GC01U903922

Summaries for LOC101927604 Gene

GeneCards Summary for LOC101927604 Gene

LOC101927604 (Uncharacterized LOC101927604) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927604 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927604 Gene

Genomics for LOC101927604 Gene

GeneHancer (GH) Regulatory Elements for LOC101927604 Gene

Promoters and enhancers for LOC101927604 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J230874 Enhancer 0.2 Ensembl 750.6 -0.3 -345 0.2 LOC101927604 C1orf198 ENSG00000223393
GH01J230878 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.6 +3.9 3855 1.4 MAFK PKNOX1 POLR2A ZNF316 BCOR ZMYM3 EMSY ENSG00000223393 FAM89A LOC101927604 piR-46501-008 lnc-C1orf198-2 ENSG00000288037
GH01J230876 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.6 +2.5 2496 1 ZIC2 FOS FOSL1 KLF17 HIC1 JUND ENSG00000223393 FAM89A ENSG00000244137 LOC101927604 piR-46501-008
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927604 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927604 Gene

Genomic Locations for LOC101927604 Gene
chr1:230,874,846-230,879,015
(GRCh38/hg38)
Size:
4,170 bases
Orientation:
Plus strand

Genomic View for LOC101927604 Gene

Genes around LOC101927604 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927604 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927604 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927604 Gene

Proteins for LOC101927604 Gene

Post-translational modifications for LOC101927604 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927604 Gene

Domains & Families for LOC101927604 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927604 Gene

Function for LOC101927604 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927604 Gene

Localization for LOC101927604 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927604 Gene

Pathways & Interactions for LOC101927604 Gene

PathCards logo

SuperPathways for LOC101927604 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927604 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927604 Gene

Drugs & Compounds for LOC101927604 Gene

No Compound Related Data Available

Transcripts for LOC101927604 Gene

mRNA/cDNA for LOC101927604 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) RNACentral transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927604 Gene

No ASD Table

Relevant External Links for LOC101927604 Gene

GeneLoc Exon Structure for
LOC101927604

Expression for LOC101927604 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927604 Gene

genes like me logo Genes that share expression patterns with LOC101927604: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927604 Gene

Orthologs for LOC101927604 Gene

No data available for Orthologs and Evolution for LOC101927604 Gene

Paralogs for LOC101927604 Gene

No data available for Paralogs for LOC101927604 Gene

Variants for LOC101927604 Gene

Sequence variations from dbSNP and Humsavar for LOC101927604 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000009608 -- 230,875,554(+) C/T non_coding_transcript_variant
rs1000235307 -- 230,876,750(+) G/A intron_variant
rs1000610752 -- 230,876,953(+) T/G intron_variant
rs1001431802 -- 230,875,600(+) C/T intron_variant
rs1001511205 -- 230,875,264(+) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927604 Gene

Variant ID Type Subtype PubMed ID
esv3589093 CNV gain 21293372
nsv1000488 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927604 Gene

Disorders for LOC101927604 Gene

No disorders were found for LOC101927604 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927604 Gene

Publications for LOC101927604 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LOC101927604 Gene

Products for LOC101927604 Gene

Sources for LOC101927604 Gene