Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC101927588 Gene

Subcategory (RNA class) for LOC101927588 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927588 Gene

  • Uncharacterized LOC101927588 3
  • AC090921.1 5

External Ids for LOC101927588 Gene

Previous GeneCards Identifiers for LOC101927588 Gene

  • GC08U901763

Summaries for LOC101927588 Gene

GeneCards Summary for LOC101927588 Gene

LOC101927588 (Uncharacterized LOC101927588) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927588 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927588 Gene

Genomics for LOC101927588 Gene

GeneHancer (GH) Regulatory Elements for LOC101927588 Gene

Promoters and enhancers for LOC101927588 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I124246 Enhancer 1 Ensembl ENCODE 550.8 -0.1 -101 1.5 HDGF ATF1 PKNOX1 KLF17 SIN3A RAD21 SCRT2 ATF7 FOS RUNX3 LOC101927588 TRMT12 FER1L6-AS2 WASHC5-AS1 GC08P124263
GH08I123498 Enhancer 0.5 dbSUPER 6.2 +746.2 746162 5.5 RXRA MAX RAD21 NR2F2 GC08M123499 LOC101927588 WDYHV1 FBXO32 ENSG00000278374
GH08I124254 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 -7.8 -7795 1.8 NFIB JUN ZMYM3 RAD21 SP1 JUND NFIC IKZF1 RCOR1 ENSG00000253227 FAM91A1 RNF139 GC08P124263 LOC101927588
GH08I124228 Enhancer 0.9 ENCODE 0.4 +18.7 18690 1.4 HDAC1 ZBTB7B RFX5 EGR1 FOS ATF7 SMARCA5 CEBPB ZEB2 ZNF623 TRMT12 WASHC5-AS1 FAM91A1 RNU6-756P RNF139 FER1L6-AS2 LOC101927588
GH08I124194 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +49.0 49049 8.7 HDGF PKNOX1 ARNT NEUROD1 SIN3A FEZF1 YBX1 ZNF2 ZBTB7B IRF4 TRMT12 FAM91A1 TMEM65 WASHC5 WASHC5-AS1 RNF139-AS1 ZNF572 RNF139 NSMCE2 FER1L6-AS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101927588 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927588 Gene

Genomic Locations for LOC101927588 Gene
chr8:124,192,671-124,247,398
(GRCh38/hg38)
Size:
54,728 bases
Orientation:
Minus strand
chr8:125,204,912-125,259,639
(GRCh37/hg19)

Genomic View for LOC101927588 Gene

Genes around LOC101927588 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927588 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927588 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927588 Gene

Proteins for LOC101927588 Gene

Post-translational modifications for LOC101927588 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927588 Gene

Domains & Families for LOC101927588 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927588 Gene

Function for LOC101927588 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927588 Gene

Localization for LOC101927588 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927588 Gene

Pathways & Interactions for LOC101927588 Gene

SuperPathways for LOC101927588 Gene

No Data Available

Interacting Proteins for LOC101927588 Gene

Gene Ontology (GO) - Biological Process for LOC101927588 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927588 Gene

Drugs & Compounds for LOC101927588 Gene

No Compound Related Data Available

Transcripts for LOC101927588 Gene

mRNA/cDNA for LOC101927588 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927588 Gene

No ASD Table

Relevant External Links for LOC101927588 Gene

GeneLoc Exon Structure for
LOC101927588

Expression for LOC101927588 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927588 Gene

genes like me logo Genes that share expression patterns with LOC101927588: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927588 Gene

Orthologs for LOC101927588 Gene

Evolution for LOC101927588 Gene

ENSEMBL:
Gene Tree for LOC101927588 (if available)
TreeFam:
Gene Tree for LOC101927588 (if available)

No data available for Orthologs for LOC101927588 Gene

Paralogs for LOC101927588 Gene

No data available for Paralogs for LOC101927588 Gene

Variants for LOC101927588 Gene

Sequence variations from dbSNP and Humsavar for LOC101927588 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000034739 -- 124,235,281(-) A/G intron_variant
rs1000059210 -- 124,219,501(-) C/T intron_variant
rs1000132317 -- 124,218,278(-) G/A intron_variant
rs1000173445 -- 124,222,507(-) C/T intron_variant
rs1000180003 -- 124,207,159(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927588 Gene

Variant ID Type Subtype PubMed ID
esv2666476 CNV deletion 23128226
esv2678449 CNV deletion 23128226
esv2737531 CNV deletion 23290073
esv2762769 CNV gain 21179565
esv3544147 CNV deletion 23714750
esv3618686 CNV loss 21293372
nsv1023183 CNV loss 25217958
nsv1150351 CNV deletion 26484159
nsv612144 CNV loss 21841781
nsv831452 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927588 Gene

Disorders for LOC101927588 Gene

Additional Disease Information for LOC101927588

No disorders were found for LOC101927588 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927588 Gene

Publications for LOC101927588 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC101927588 Gene

Sources for LOC101927588 Gene

Content
Loading form....