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LOC101927583 Gene(RNA Gene)

Uncharacterized LOC101927583

GCID:
GC12M057618
GIFtS:
6
Genes Participants
UDN Logo

Aliases for LOC101927583 Gene

Subcategory (RNA class) for LOC101927583 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101927583 Gene

  • Uncharacterized LOC101927583 3

External Ids for LOC101927583 Gene

Previous GeneCards Identifiers for LOC101927583 Gene

  • GC12U901768

Summaries for LOC101927583 Gene

GeneCards Summary for LOC101927583 Gene

LOC101927583 (Uncharacterized LOC101927583) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927583 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927583 Gene

Genomics for LOC101927583 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LOC101927583 Gene

Promoters and enhancers for LOC101927583 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J057619 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 650.7 +1.1 1145 3.2 HDGF ARID4B SIN3A ZNF2 ZNF48 GLIS2 ARID2 ZNF143 RUNX3 MXD4 LOC101927583 SLC26A10 ENSG00000224713 EEF1AKMT3 ARHGEF25
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927583 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927583 Gene

Genomic Locations for LOC101927583 Gene
chr12:57,618,405-57,621,903
(GRCh38/hg38)
Size:
3,499 bases
Orientation:
Minus strand

Genomic View for LOC101927583 Gene

Genes around LOC101927583 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927583 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927583 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101927583 Gene

Proteins for LOC101927583 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC101927583 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927583 Gene

Domains & Families for LOC101927583 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927583 Gene

Function for LOC101927583 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927583 Gene

Localization for LOC101927583 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927583 Gene

Pathways & Interactions for LOC101927583 Gene

SuperPathways for LOC101927583 Gene

PathCards logo More details on SuperPathways for LOC101927583
No Data Available

Interacting Proteins for LOC101927583 Gene

Gene Ontology (GO) - Biological Process for LOC101927583 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927583 Gene

Drugs & Compounds for LOC101927583 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC101927583 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC101927583 Gene

(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927583 Gene

No ASD Table

Relevant External Links for LOC101927583 Gene

GeneLoc Exon Structure for
LOC101927583

Expression for LOC101927583 Gene

Products:

  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927583 Gene

Orthologs for LOC101927583 Gene

No data available for Orthologs and Evolution for LOC101927583 Gene

Paralogs for LOC101927583 Gene

No data available for Paralogs for LOC101927583 Gene

Variants for LOC101927583 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC101927583 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000249907 -- 57,622,016(-) C/T upstream_transcript_variant
rs1000603740 -- 57,620,582(-) G/T intron_variant
rs1001508563 -- 57,618,453(-) C/T non_coding_transcript_variant
rs1001509846 -- 57,618,253(-) C/T downstream_transcript_variant
rs1001894098 -- 57,620,211(-) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927583 Gene

Variant ID Type Subtype PubMed ID
nsv482992 CNV gain+loss 15286789
nsv559034 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927583 Gene

Disorders for LOC101927583 Gene

Additional Disease Information for LOC101927583

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LOC101927583 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927583 Gene

Publications for LOC101927583 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC101927583 Gene

Sources for LOC101927583 Gene

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