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Aliases for LOC101927583 Gene
Summaries for LOC101927583 Gene
GeneCards Summary for LOC101927583 Gene
LOC101927583 (Uncharacterized LOC101927583) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC101927583 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927583 Gene
Genomics for LOC101927583 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC101927583 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J057621 | Promoter/Enhancer | 1.2 | Ensembl ENCODE | 600.7 | +0.0 | 2 | 0.2 | CTCF BACH1 JUND LARP7 MTA2 ZNF143 ZIC2 POLR2A PATZ1 REST | ENSG00000224713 LOC101927583 SLC26A10 ENSG00000287908 B4GALNT1 RF00017-1166 | |
| GH12J057622 | Promoter | 0.7 | Ensembl | 600.7 | +0.7 | 702 | 0.4 | EZH2 MGA MNT CTCF PCBP1 PTBP1 BHLHE40 MAX ZBTB33 L3MBTL2 | ENSG00000224713 LOC101927583 SLC26A10 ENSG00000287908 B4GALNT1 RF00017-1166 | |
| GH12J057623 | Enhancer | 0.4 | Ensembl | 600.7 | -1.9 | -1898 | 0.4 | REST ZNF600 SPI1 | ENSG00000224713 LOC101927583 lnc-DCTN2-1 SLC26A10 B4GALNT1 ENSG00000287908 RF00017-1166 | |
| GH12J057619 | Promoter/Enhancer | 1.1 | EPDnew Ensembl ENCODE | 0.7 | +2.4 | 2402 | 0.2 | RBFOX2 EZH2 GABPB1 DNMT3B SIN3A ZBTB33 | SLC26A10 ENSG00000224713 ENSG00000287908 LOC101927583 B4GALNT1 RF00017-1166 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC101927583 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC101927583 Gene
Genomic Locations for LOC101927583 Gene
- chr12:57,618,405-57,621,903
- (GRCh38/hg38)
- Size:
- 3,499 bases
- Orientation:
- Minus strand
Genomic View for LOC101927583 Gene
Genes around LOC101927583 on UCSC Golden Path with GeneCards custom track
LOC101927583 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12q13.3 by Entrez Gene
LOC101927583 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC101927583 Gene
Proteins for LOC101927583 Gene
Post-translational modifications for LOC101927583 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC101927583
- Origene Custom Protein Services for LOC101927583
No data available for DME Specific Peptides for LOC101927583 Gene
Domains & Families for LOC101927583 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927583 Gene
Function for LOC101927583 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927583 Gene
Localization for LOC101927583 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927583 Gene
Transcripts for LOC101927583 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927583 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075DA8B_9606 | lncRNA | 2444 | 1 |
RefSeq: NR_120450, |
LOC101927583 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC101927583 Gene
- 1 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC101927583 Gene
- GeneLoc Exon Structure for
- LOC101927583
Expression for LOC101927583 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927583
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927583 Gene
Orthologs for LOC101927583 Gene
No data available for Orthologs and Evolution for LOC101927583 Gene
Paralogs for LOC101927583 Gene
No data available for Paralogs for LOC101927583 Gene
Variants for LOC101927583 Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC101927583 Gene
| SNP ID | Clinical significance and condition | Chr 12 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| 739825 | Likely Benign: not provided | 57,621,734(-) | C/T | NON_CODING_TRANSCRIPT_VARIANT |
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927583 Gene
Disorders for LOC101927583 Gene
No disorders were found for LOC101927583 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927583 Gene
Publications for LOC101927583 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
No data available for Mastermind for LOC101927583 Gene
Products for LOC101927583 Gene
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- Origene Custom Protein Services for LOC101927583
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- Browse CRISPR knockouts for LOC101927583
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
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Sources for LOC101927583 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB