Aliases for LOC101927583 Gene

Subcategory (RNA class) for LOC101927583 Gene

lncRNA

Aliases for LOC101927583 Gene

  • Uncharacterized LOC101927583 3

External Ids for LOC101927583 Gene

Previous GeneCards Identifiers for LOC101927583 Gene

  • GC12U901768

Summaries for LOC101927583 Gene

GeneCards Summary for LOC101927583 Gene

LOC101927583 (Uncharacterized LOC101927583) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927583 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927583 Gene

Genomics for LOC101927583 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101927583 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J057621 Promoter/Enhancer 1.2 Ensembl ENCODE 600.7 +0.0 2 0.2 CTCF BACH1 JUND LARP7 MTA2 ZNF143 ZIC2 POLR2A PATZ1 REST ENSG00000224713 LOC101927583 SLC26A10 ENSG00000287908 B4GALNT1 RF00017-1166
GH12J057622 Promoter 0.7 Ensembl 600.7 +0.7 702 0.4 EZH2 MGA MNT CTCF PCBP1 PTBP1 BHLHE40 MAX ZBTB33 L3MBTL2 ENSG00000224713 LOC101927583 SLC26A10 ENSG00000287908 B4GALNT1 RF00017-1166
GH12J057623 Enhancer 0.4 Ensembl 600.7 -1.9 -1898 0.4 REST ZNF600 SPI1 ENSG00000224713 LOC101927583 lnc-DCTN2-1 SLC26A10 B4GALNT1 ENSG00000287908 RF00017-1166
GH12J057619 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 0.7 +2.4 2402 0.2 RBFOX2 EZH2 GABPB1 DNMT3B SIN3A ZBTB33 SLC26A10 ENSG00000224713 ENSG00000287908 LOC101927583 B4GALNT1 RF00017-1166
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927583 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927583 Gene

Genomic Locations for LOC101927583 Gene
chr12:57,618,405-57,621,903
(GRCh38/hg38)
Size:
3,499 bases
Orientation:
Minus strand

Genomic View for LOC101927583 Gene

Genes around LOC101927583 on UCSC Golden Path with GeneCards custom track
LOC101927583 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101927583 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927583 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927583 Gene

Proteins for LOC101927583 Gene

Post-translational modifications for LOC101927583 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927583 Gene

Domains & Families for LOC101927583 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927583 Gene

Function for LOC101927583 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927583 Gene

Localization for LOC101927583 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927583 Gene

Pathways & Interactions for LOC101927583 Gene

PathCards logo

SuperPathways for LOC101927583 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927583 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927583 Gene

Drugs & Compounds for LOC101927583 Gene

No Compound Related Data Available

Transcripts for LOC101927583 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927583 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DA8B_9606 lncRNA 2444 1

RefSeq: NR_120450,

LOC101927583 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101927583 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927583 Gene

No ASD Table

Relevant External Links for LOC101927583 Gene

GeneLoc Exon Structure for
LOC101927583

Expression for LOC101927583 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927583

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927583 Gene

Orthologs for LOC101927583 Gene

No data available for Orthologs and Evolution for LOC101927583 Gene

Paralogs for LOC101927583 Gene

No data available for Paralogs for LOC101927583 Gene

Variants for LOC101927583 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC101927583 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
739825 Likely Benign: not provided 57,621,734(-) C/T NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for LOC101927583 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101927583 Gene

Variant ID Type Subtype PubMed ID
nsv482992 CNV gain+loss 15286789
nsv559034 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927583 Gene

Disorders for LOC101927583 Gene

No disorders were found for LOC101927583 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927583 Gene

Publications for LOC101927583 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC101927583 Gene

Products for LOC101927583 Gene

Sources for LOC101927583 Gene