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Aliases for LOC101927560 Gene
Subcategory (RNA class) for LOC101927560 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LOC101927560 Gene
External Ids for LOC101927560 Gene
- Entrez Gene: 101927560
Previous GeneCards Identifiers for LOC101927560 Gene
- GC01U903837
- GC01M083575
Summaries for LOC101927560 Gene
GeneCards Summary for LOC101927560 Gene
LOC101927560 (Uncharacterized LOC101927560) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC101927560 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927560 Gene
Genomics for LOC101927560 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC101927560 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J083860 | Promoter/Enhancer | 1.7 | EPDnew Ensembl ENCODE CraniofacialAtlas | 600.7 | -0.3 | -277 | 1.6 | CTCF ZNF692 RFX1 PKNOX1 REST ZNF341 MGA ZFX ZBTB20 GATAD2B | LINC01725 LOC101927560 LOC107985041 TTLL7 | |
| GH01J083856 | Enhancer | 0.5 | Ensembl | 0.7 | +3.3 | 3345 | 0.8 | CTCF RAD21 YY1 FOXM1 ZNF654 ZNF660 YY2 PKNOX1 ZEB2 | LINC01725 LOC101927560 MN308956 TTLL7 | |
| GH01J083818 | Enhancer | 1 | FANTOM5 Ensembl ENCODE | 0.3 | +41.4 | 41445 | 2.6 | RFX1 SP1 FOXJ2 RFX3 BMI1 NR2C2 ZBTB33 JUND CEBPG NR2F1 | LINC01725 CTBS MN308956 LOC101927560 TTLL7 | |
| GH01J083845 | Enhancer | 0.7 | Ensembl | 0.4 | +14.9 | 14945 | 0.4 | CEBPG SP1 CEBPA CEBPB FOXA2 YY1 GABPA ZBTB33 JUND RAD21 | LINC01725 LOC101927560 MN308956 TTLL7 | |
| GH01J083839 | Enhancer | 0.7 | Ensembl | 0.4 | +20.6 | 20649 | 0.6 | RNF2 ZNF692 CEBPA ZBTB44 CEBPB ZNF316 ATF3 ZBTB17 ATF2 JUND | LINC01725 LOC101927560 MN308956 TTLL7 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC101927560 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC101927560 Gene
Genomic Locations for LOC101927560 Gene
- chr1:83,801,516-83,860,546
- (GRCh38/hg38)
- Size:
- 59,031 bases
- Orientation:
- Minus strand
Genomic View for LOC101927560 Gene
Genes around LOC101927560 on UCSC Golden Path with GeneCards custom track
LOC101927560 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 1p31.1 by Entrez Gene
LOC101927560 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC101927560 Gene
Proteins for LOC101927560 Gene
Post-translational modifications for LOC101927560 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC101927560
- Origene Custom Protein Services for LOC101927560
No data available for DME Specific Peptides for LOC101927560 Gene
Domains & Families for LOC101927560 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927560 Gene
Function for LOC101927560 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927560 Gene
Localization for LOC101927560 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927560 Gene
Transcripts for LOC101927560 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927560 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000057EC58_9606 | lncRNA | 1991 | 4 |
RefSeq: NR_119374, Ensembl: ENST00000457273 (view in UCSC) , LNCipedia: LINC01725:44, NONCODE: NONHSAT004171.2, |
| URS00008B91A6_9606 | lncRNA | 723 | 3 |
LncBook: HSALNT0009643, LNCipedia: LINC01725:28, NONCODE: NONHSAT004166.2, |
| URS00008B9A79_9606 | lncRNA | 689 | 3 |
LncBook: HSALNT0009642, LNCipedia: LINC01725:29, NONCODE: NONHSAT004167.2, |
| URS0000D58D69_9606 | lncRNA | 3197 | 2 |
LncBook: HSALNT0009629, LNCipedia: LINC01725:32, |
| URS0000D5DDA9_9606 | lncRNA | 2637 | 2 |
LncBook: HSALNT0009660, LNCipedia: LINC01725:38, |
LOC101927560 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC101927560 Gene
- 1 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC101927560 Gene
- GeneLoc Exon Structure for
- LOC101927560
Expression for LOC101927560 Gene
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927560 Gene
Orthologs for LOC101927560 Gene
No data available for Orthologs and Evolution for LOC101927560 Gene
Paralogs for LOC101927560 Gene
No data available for Paralogs for LOC101927560 Gene
Variants for LOC101927560 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2133471 | CNV | deletion | 18987734 |
| esv2667790 | CNV | deletion | 23128226 |
| esv2671930 | CNV | deletion | 23128226 |
| esv2714196 | CNV | deletion | 23290073 |
| esv2714207 | CNV | deletion | 23290073 |
| esv3565104 | CNV | deletion | 23714750 |
| esv3565115 | CNV | deletion | 23714750 |
| esv3586654 | CNV | loss | 21293372 |
| esv3586655 | CNV | loss | 21293372 |
| esv3743 | CNV | loss | 18987735 |
| nsv523508 | CNV | loss | 19592680 |
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927560 Gene
Disorders for LOC101927560 Gene
No disorders were found for LOC101927560 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927560 Gene
Publications for LOC101927560 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
No data available for Mastermind for LOC101927560 Gene
Products for LOC101927560 Gene
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Sources for LOC101927560 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB