Aliases for LOC101927560 Gene

Subcategory (RNA class) for LOC101927560 Gene


Number of RNA Genes sources:

3 / 17

Aliases for LOC101927560 Gene

  • Uncharacterized LOC101927560 3
  • NONHSAG001930.2 91
  • HSALNG0004773 164
  • LINC01725 165

External Ids for LOC101927560 Gene

Previous GeneCards Identifiers for LOC101927560 Gene

  • GC01U903837
  • GC01M083575

Summaries for LOC101927560 Gene

GeneCards Summary for LOC101927560 Gene

LOC101927560 (Uncharacterized LOC101927560) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927560 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927560 Gene

Genomics for LOC101927560 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101927560 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J083860 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.3 -277 1.6 CTCF ZNF692 RFX1 PKNOX1 REST ZNF341 MGA ZFX ZBTB20 GATAD2B LINC01725 LOC101927560 LOC107985041 TTLL7
GH01J083856 Enhancer 0.5 Ensembl 0.7 +3.3 3345 0.8 CTCF RAD21 YY1 FOXM1 ZNF654 ZNF660 YY2 PKNOX1 ZEB2 LINC01725 LOC101927560 MN308956 TTLL7
GH01J083818 Enhancer 1 FANTOM5 Ensembl ENCODE 0.3 +41.4 41445 2.6 RFX1 SP1 FOXJ2 RFX3 BMI1 NR2C2 ZBTB33 JUND CEBPG NR2F1 LINC01725 CTBS MN308956 LOC101927560 TTLL7
GH01J083845 Enhancer 0.7 Ensembl 0.4 +14.9 14945 0.4 CEBPG SP1 CEBPA CEBPB FOXA2 YY1 GABPA ZBTB33 JUND RAD21 LINC01725 LOC101927560 MN308956 TTLL7
GH01J083839 Enhancer 0.7 Ensembl 0.4 +20.6 20649 0.6 RNF2 ZNF692 CEBPA ZBTB44 CEBPB ZNF316 ATF3 ZBTB17 ATF2 JUND LINC01725 LOC101927560 MN308956 TTLL7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927560 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927560 Gene

Genomic Locations for LOC101927560 Gene
59,031 bases
Minus strand

Genomic View for LOC101927560 Gene

Genes around LOC101927560 on UCSC Golden Path with GeneCards custom track
LOC101927560 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101927560 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927560 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927560 Gene

Proteins for LOC101927560 Gene

Post-translational modifications for LOC101927560 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927560 Gene

Domains & Families for LOC101927560 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927560 Gene

Function for LOC101927560 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927560 Gene

Localization for LOC101927560 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927560 Gene

Pathways & Interactions for LOC101927560 Gene

PathCards logo

SuperPathways for LOC101927560 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927560 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927560 Gene

Drugs & Compounds for LOC101927560 Gene

No Compound Related Data Available

Transcripts for LOC101927560 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927560 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000057EC58_9606 lncRNA 1991 4

RefSeq: NR_119374,

Ensembl: ENST00000457273 (view in UCSC) ,

LNCipedia: LINC01725:44,


URS00008B91A6_9606 lncRNA 723 3

LncBook: HSALNT0009643,

LNCipedia: LINC01725:28,


URS00008B9A79_9606 lncRNA 689 3

LncBook: HSALNT0009642,

LNCipedia: LINC01725:29,


URS0000D58D69_9606 lncRNA 3197 2

LncBook: HSALNT0009629,

LNCipedia: LINC01725:32,

URS0000D5DDA9_9606 lncRNA 2637 2

LncBook: HSALNT0009660,

LNCipedia: LINC01725:38,

LOC101927560 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101927560 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927560 Gene

No ASD Table

Relevant External Links for LOC101927560 Gene

GeneLoc Exon Structure for

Expression for LOC101927560 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927560 Gene

Orthologs for LOC101927560 Gene

No data available for Orthologs and Evolution for LOC101927560 Gene

Paralogs for LOC101927560 Gene

No data available for Paralogs for LOC101927560 Gene

Variants for LOC101927560 Gene

Additional dbSNP identifiers (rs#s) for LOC101927560 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101927560 Gene

Variant ID Type Subtype PubMed ID
esv2133471 CNV deletion 18987734
esv2667790 CNV deletion 23128226
esv2671930 CNV deletion 23128226
esv2714196 CNV deletion 23290073
esv2714207 CNV deletion 23290073
esv3565104 CNV deletion 23714750
esv3565115 CNV deletion 23714750
esv3586654 CNV loss 21293372
esv3586655 CNV loss 21293372
esv3743 CNV loss 18987735
nsv523508 CNV loss 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927560 Gene

Disorders for LOC101927560 Gene

No disorders were found for LOC101927560 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927560 Gene

Publications for LOC101927560 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101927560 Gene

Products for LOC101927560 Gene

Sources for LOC101927560 Gene