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Aliases for LOC101927543 Gene

Subcategory (RNA class) for LOC101927543 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927543 Gene

  • Uncharacterized LOC101927543 3
  • AC104958.1 5

External Ids for LOC101927543 Gene

Previous GeneCards Identifiers for LOC101927543 Gene

  • GC08U901769

Summaries for LOC101927543 Gene

GeneCards Summary for LOC101927543 Gene

LOC101927543 (Uncharacterized LOC101927543) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927543 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927543 Gene

Genomics for LOC101927543 Gene

GeneHancer (GH) Regulatory Elements for LOC101927543 Gene

Promoters and enhancers for LOC101927543 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I120761 Enhancer 0.8 ENCODE 550.8 +1.1 1102 1.6 ELF3 FOXA2 MLX DMAP1 THRB ZNF48 RARA ETS1 CREM THAP11 LOC101927543 SNTB1 ENSG00000272502
GH08I120784 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 17.9 +24.5 24456 2.9 ELF3 FOXA2 NFIB ARID4B BRCA1 ZSCAN9 RAD21 FOS THAP11 EGR2 LOC101927543 ENSG00000272502 SNTB1
GH08I120728 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.5 -30.0 -30041 4.8 HDGF SRF PKNOX1 ZNF146 ZNF687 BMI1 ZNF217 SSRP1 TARDBP IKZF1 LOC101927543 SNTB1 NCAPGP1
GH08I120734 Enhancer 1 Ensembl ENCODE dbSUPER 12 -25.9 -25881 1.5 FOXA2 TFE3 RXRA HLF MAX REST RAD21 FOXA1 YY1 SSRP1 LOC101927543 SNTB1 NCAPGP1
GH08I120844 Enhancer 1.1 ENCODE dbSUPER 10.6 +85.2 85171 3.5 FOXA2 MLX YY1 RXRA SP5 MIER2 REST PPARG KAT8 NFIL3 SNTB1 LOC101927543 GC08P120906
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101927543 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927543 Gene

Genomic Locations for LOC101927543 Gene
chr8:120,761,253-120,776,832
(GRCh38/hg38)
Size:
15,580 bases
Orientation:
Plus strand
chr8:121,773,493-121,789,072
(GRCh37/hg19)

Genomic View for LOC101927543 Gene

Genes around LOC101927543 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927543 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927543 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927543 Gene

Proteins for LOC101927543 Gene

Post-translational modifications for LOC101927543 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927543 Gene

Domains & Families for LOC101927543 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927543 Gene

Function for LOC101927543 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927543 Gene

Localization for LOC101927543 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927543 Gene

Pathways & Interactions for LOC101927543 Gene

SuperPathways for LOC101927543 Gene

No Data Available

Interacting Proteins for LOC101927543 Gene

Gene Ontology (GO) - Biological Process for LOC101927543 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927543 Gene

Drugs & Compounds for LOC101927543 Gene

No Compound Related Data Available

Transcripts for LOC101927543 Gene

mRNA/cDNA for LOC101927543 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927543 Gene

No ASD Table

Relevant External Links for LOC101927543 Gene

GeneLoc Exon Structure for
LOC101927543

Expression for LOC101927543 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927543 Gene

genes like me logo Genes that share expression patterns with LOC101927543: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927543 Gene

Orthologs for LOC101927543 Gene

Evolution for LOC101927543 Gene

ENSEMBL:
Gene Tree for LOC101927543 (if available)
TreeFam:
Gene Tree for LOC101927543 (if available)

No data available for Orthologs for LOC101927543 Gene

Paralogs for LOC101927543 Gene

No data available for Paralogs for LOC101927543 Gene

Variants for LOC101927543 Gene

Sequence variations from dbSNP and Humsavar for LOC101927543 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000064662 -- 120,765,958(+) C/CC intron_variant
rs1000240812 -- 120,766,334(+) G/T intron_variant
rs1000310049 -- 120,772,435(+) C/T intron_variant
rs1000445761 -- 120,760,195(+) A/C upstream_transcript_variant
rs1000475713 -- 120,766,962(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927543 Gene

Variant ID Type Subtype PubMed ID
esv2759640 CNV gain 17122850
nsv1016172 CNV loss 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927543 Gene

Disorders for LOC101927543 Gene

Additional Disease Information for LOC101927543

No disorders were found for LOC101927543 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927543 Gene

Publications for LOC101927543 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC101927543 Gene

Sources for LOC101927543 Gene

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