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Aliases for LOC101927539 Gene

Subcategory (RNA class) for LOC101927539 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101927539 Gene

  • Uncharacterized LOC101927539 3

External Ids for LOC101927539 Gene

Previous GeneCards Identifiers for LOC101927539 Gene

  • GC17U901827

Summaries for LOC101927539 Gene

GeneCards Summary for LOC101927539 Gene

LOC101927539 (Uncharacterized LOC101927539) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927539 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927539 Gene

Genomics for LOC101927539 Gene

GeneHancer (GH) Regulatory Elements for LOC101927539 Gene

Promoters and enhancers for LOC101927539 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J057602 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +2.1 2059 7.5 CTCF ELF3 CEBPG RERE ZNF687 NFIB AHR SP7 PPARG MLLT1 CCDC182 MSI2 ENSG00000263499 LOC101927539 ENSG00000280028
GH17J057611 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.7 -4.1 -4129 1.8 MLLT1 ZBTB33 ZIC2 PKNOX1 KLF9 SOX6 RFX1 ELF1 NBN SIX4 MSI2 ENSG00000263499 LOC101927539 RN7SL449P
GH17J057598 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +7.8 7812 3.3 NFIB FOSL2 GATAD2B ZIC2 ZKSCAN1 ELF1 RCOR1 ZNF132 NCOA3 FOS CCDC182 ENSG00000263499 LOC101927539 ENSG00000280028 MSI2
GH17J057597 Enhancer 1 ENCODE dbSUPER 0.4 +10.4 10430 1.4 ELF3 CTCF CEBPG TFE3 SP5 KAT8 IKZF1 POLR2A HMG20B ZNF600 LOC101927539 ENSG00000263499 ENSG00000280028 MSI2
GH17J057577 Enhancer 1.2 ENCODE dbSUPER 0.3 +30.4 30389 1.8 ELF3 CEBPG RERE ZSCAN21 TFE3 SP7 SP1 PPARG SP5 PRDM1 MKS1 SRSF1 COIL ENSG00000263499 LOC101927539 ENSG00000280028 MSI2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927539 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927539 Gene

Genomic Locations for LOC101927539 Gene
chr17:57,600,864-57,608,412
(GRCh38/hg38)
Size:
7,549 bases
Orientation:
Minus strand

Genomic View for LOC101927539 Gene

Genes around LOC101927539 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927539 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927539 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927539 Gene

Proteins for LOC101927539 Gene

Post-translational modifications for LOC101927539 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927539 Gene

Domains & Families for LOC101927539 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927539 Gene

Function for LOC101927539 Gene

Phenotypes From GWAS Catalog for LOC101927539 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927539 Gene

Localization for LOC101927539 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927539 Gene

Pathways & Interactions for LOC101927539 Gene

PathCards logo

SuperPathways for LOC101927539 Gene

No Data Available

Interacting Proteins for LOC101927539 Gene

Gene Ontology (GO) - Biological Process for LOC101927539 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927539 Gene

Drugs & Compounds for LOC101927539 Gene

No Compound Related Data Available

Transcripts for LOC101927539 Gene

mRNA/cDNA for LOC101927539 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927539 Gene

No ASD Table

Relevant External Links for LOC101927539 Gene

GeneLoc Exon Structure for
LOC101927539

Expression for LOC101927539 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927539 Gene

Orthologs for LOC101927539 Gene

No data available for Orthologs and Evolution for LOC101927539 Gene

Paralogs for LOC101927539 Gene

No data available for Paralogs for LOC101927539 Gene

Variants for LOC101927539 Gene

Sequence variations from dbSNP and Humsavar for LOC101927539 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000271427 -- 57,601,420(-) C/A non_coding_transcript_variant
rs1000384351 -- 57,607,642(-) G/A intron_variant
rs1000530959 -- 57,602,658(-) C/A intron_variant
rs1000604660 -- 57,603,094(-) G/A/C intron_variant
rs1000873505 -- 57,602,603(-) CC/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927539 Gene

Variant ID Type Subtype PubMed ID
dgv956e212 CNV loss 25503493
esv33941 CNV loss 17666407
esv988833 CNV deletion 20482838
nsv1055155 CNV loss 25217958
nsv833496 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927539 Gene

Disorders for LOC101927539 Gene

No disorders were found for LOC101927539 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927539 Gene

Publications for LOC101927539 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC101927539 Gene

Products for LOC101927539 Gene

Sources for LOC101927539 Gene

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