Aliases for LOC101927509 Gene

Data sources for LOC101927509 Gene:

Subcategory (RNA class) for LOC101927509 Gene

lncRNA

Aliases for LOC101927509 Gene

External Ids for LOC101927509 Gene

Previous GeneCards Identifiers for LOC101927509 Gene

  • GC02U902682

Summaries for LOC101927509 Gene

GeneCards Summary for LOC101927509 Gene

LOC101927509 (Uncharacterized LOC101927509) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927509 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927509 Gene

Genomics for LOC101927509 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101927509 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J241269 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.2 -218 4.2 TBP ZBTB10 SP1 MNT ZFP64 ZNF217 SIN3A MAX VEZF1 MAFF HDLBP LOC101927509 SEPTIN2 FARP2 ANO7 lnc-PASK-3 lnc-PASK-4
GH02J241285 Enhancer 1.1 Ensembl ENCODE 0.4 +13.3 13324 0.7 FOXA1 HOMEZ THAP11 ZNF511 FOXA2 MAFF SMAD4 SAP130 RXRA ZSCAN9 FARP2 SEPTIN2 HDLBP ANO7 PASK PPP1R7 LOC101927509 lnc-PASK-4
GH02J241279 Enhancer 1 Ensembl ENCODE 0.4 +7.8 7836 2.4 CEBPA IKZF1 CEBPB SMAD4 RBM22 JUND KDM1A IRF9 HMG20A ZNF318 SEPTIN2 ANO7 HDLBP MTERF4 PASK PPP1R7 LOC101927509 lnc-PASK-4
GH02J241270 Enhancer 0.6 ENCODE 0.7 -3.0 -3003 0.2 SIN3A TCF7L2 SP7 PRDM4 FOSL2 ZSCAN21 MNT FOS ZNF558 PRDM10 LOC101927509 lnc-PASK-3 HDLBP SEPTIN2 lnc-PASK-4 ANO7
GH02J241267 Enhancer 0.5 Ensembl 0.7 -4.6 -4563 0.4 FOXA2 SAP130 RARA RAD21 CTCF TFAP4 ARID4B FOXA3 FARP2 LOC101927509 lnc-PASK-3 HDLBP SEPTIN2 lnc-PASK-4 ANO7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927509 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927509 Gene

Latest Assembly
chr2:241,272,164-241,276,939
(GRCh38/hg38)
Size:
4,776 bases
Orientation:
Plus strand

Previous Assembly
chr2:242,211,579-242,216,354
(GRCh37/hg19 by Entrez Gene)
Size:
4,776 bases
Orientation:
Plus strand

Genomic View for LOC101927509 Gene

Genes around LOC101927509 on UCSC Golden Path with GeneCards custom track
LOC101927509 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101927509 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927509 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927509 Gene

Proteins for LOC101927509 Gene

Post-translational modifications for LOC101927509 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927509 Gene

Domains & Families for LOC101927509 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927509 Gene

Function for LOC101927509 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927509 Gene

Localization for LOC101927509 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927509 Gene

Pathways & Interactions for LOC101927509 Gene

PathCards logo

SuperPathways for LOC101927509 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927509 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927509 Gene

Drugs & Compounds for LOC101927509 Gene

No Compound Related Data Available

Transcripts for LOC101927509 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927509 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0001BBE614_9606 lncRNA 4458 1

RefSeq: NR_168372,

URS0000EA7C86_9606 lncRNA 243 1

LncBook: HSALNT0049896,

LOC101927509 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101927509 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927509 Gene

No ASD Table

Relevant External Links for LOC101927509 Gene

GeneLoc Exon Structure for
LOC101927509

Expression for LOC101927509 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927509 Gene

Orthologs for LOC101927509 Gene

No data available for Orthologs and Evolution for LOC101927509 Gene

Paralogs for LOC101927509 Gene

No data available for Paralogs for LOC101927509 Gene

Variants for LOC101927509 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101927509 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927509 Gene

Disorders for LOC101927509 Gene

No disorders were found for LOC101927509 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927509 Gene

Publications for LOC101927509 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3

No data available for Mastermind for LOC101927509 Gene

Products for LOC101927509 Gene

Sources for LOC101927509 Gene