Aliases for LOC101927478 Gene

Subcategory (RNA class) for LOC101927478 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC101927478 Gene

  • Uncharacterized LOC101927478 3
  • HSALNG0011328 169
  • NONHSAG004570 94
  • Lnc-URB2-1 170

External Ids for LOC101927478 Gene

Previous GeneCards Identifiers for LOC101927478 Gene

  • GC01U903674

Summaries for LOC101927478 Gene

GeneCards Summary for LOC101927478 Gene

LOC101927478 (Uncharacterized LOC101927478) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927478 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927478 Gene

Genomics for LOC101927478 Gene

GeneHancer (GH) Regulatory Elements for LOC101927478 Gene

Promoters and enhancers for LOC101927478 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J229507 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 -0.2 -188 3.3 SP1 FOXA1 MLX RBPJ POLR2A ATF1 CREB1 HCFC1 MIXL1 ZNF362 NUP133 ENSG00000223635 LOC101927478 HMGN2P19 ENSG00000226920 BTNL10 URB2 RF00017-507
GH01J229514 Enhancer 0.9 Ensembl ENCODE 0.4 +6.3 6332 0.7 CTCF L3MBTL2 RAD21 TEAD4 ZNF652 BCL6B SP7 PRDM1 CREB1 REST LOC101927478 KR153225-002
GH01J229513 Enhancer 0.2 Ensembl 0.4 +5.3 5270 1 HMGN2P19 ENSG00000223635 LOC101927478 KR153225-002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927478 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927478 Gene

Genomic Locations for LOC101927478 Gene
chr1:229,508,430-229,514,087
(GRCh38/hg38)
Size:
5,658 bases
Orientation:
Plus strand

Genomic View for LOC101927478 Gene

Genes around LOC101927478 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927478 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927478 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927478 Gene

Proteins for LOC101927478 Gene

Post-translational modifications for LOC101927478 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927478 Gene

Domains & Families for LOC101927478 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927478 Gene

Function for LOC101927478 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927478 Gene

Localization for LOC101927478 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927478 Gene

Pathways & Interactions for LOC101927478 Gene

PathCards logo

SuperPathways for LOC101927478 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927478 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927478 Gene

Drugs & Compounds for LOC101927478 Gene

No Compound Related Data Available

Transcripts for LOC101927478 Gene

mRNA/cDNA for LOC101927478 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(8) RNACentral transcripts :
(1) LncBook transcripts :
(8) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927478 Gene

No ASD Table

Relevant External Links for LOC101927478 Gene

GeneLoc Exon Structure for
LOC101927478

Expression for LOC101927478 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927478 Gene

genes like me logo Genes that share expression patterns with LOC101927478: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927478 Gene

Orthologs for LOC101927478 Gene

No data available for Orthologs and Evolution for LOC101927478 Gene

Paralogs for LOC101927478 Gene

No data available for Paralogs for LOC101927478 Gene

Variants for LOC101927478 Gene

Sequence variations from dbSNP and Humsavar for LOC101927478 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000801009 -- 229,507,619(+) A/C upstream_transcript_variant
rs1000937972 -- 229,507,173(+) G/A upstream_transcript_variant
rs1001118998 -- 229,514,026(+) G/C non_coding_transcript_variant
rs1001285236 -- 229,514,423(+) A/G downstream_transcript_variant
rs1001491921 -- 229,508,402(+) C/G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927478 Gene

Variant ID Type Subtype PubMed ID
esv3398475 CNV duplication 20981092

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927478 Gene

Disorders for LOC101927478 Gene

No disorders were found for LOC101927478 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927478 Gene

Publications for LOC101927478 Gene

No publications were found for LOC101927478 Gene.

No data available for External Links for LOC101927478 Gene

Products for LOC101927478 Gene

Sources for LOC101927478 Gene