Aliases for LOC101927476 Gene

Subcategory (RNA class) for LOC101927476 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC101927476 Gene

  • Uncharacterized LOC101927476 3
  • NONHSAG054272 92
  • Lnc-ATP6AP2-2 168
  • HSALNG0137402 167

External Ids for LOC101927476 Gene

Previous GeneCards Identifiers for LOC101927476 Gene

  • GC0XU901861

Summaries for LOC101927476 Gene

GeneCards Summary for LOC101927476 Gene

LOC101927476 (Uncharacterized LOC101927476) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927476 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927476 Gene

Genomics for LOC101927476 Gene

GeneHancer (GH) Regulatory Elements for LOC101927476 Gene

Promoters and enhancers for LOC101927476 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ040261 Enhancer 0.9 Ensembl ENCODE 500.7 -0.2 -216 2.6 TRIM28 TOE1 ZNF341 NR2F2 TCF7L2 CTCF GABPA NCOR1 MAX POLR2G ENSG00000236393 LOC101927476 piR-50308-670
GH0XJ040265 Promoter/Enhancer 1.4 ENCODE CraniofacialAtlas 0.7 +4.0 4039 2.8 CTCF TCF12 NRF1 ZBTB26 REST MEF2C MYC RAD21 CTBP1 SMC3 ENSG00000236393 LOC101927476 RF01210-410
GH0XJ040273 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 +10.3 10284 2 AFF1 TRIM28 HES1 TOE1 MYC CTBP1 TAF9B MXI1 HDAC3 NCOR1 BCOR ATP6AP2 ENSG00000236393 RF01210-410 LOC101927476
GH0XJ040278 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 +18.3 18270 6.8 ZIC2 ZNF423 ZNF623 ZNF510 REST RFX1 ATF2 RBM25 OSR2 ZNF585B MED14 RF01210-410 LOC101927476 ENSG00000236393
GH0XJ040260 Enhancer 0.4 Ensembl 0.7 -2.5 -2516 0.8 NRF1 EGR2 ZNF148 EGR1 ELF1 ENSG00000236393 LOC101927476 piR-50308-670
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927476 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927476 Gene

Genomic Locations for LOC101927476 Gene
chrX:40,262,917-40,287,721
(GRCh38/hg38)
Size:
24,805 bases
Orientation:
Plus strand

Genomic View for LOC101927476 Gene

Genes around LOC101927476 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927476 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927476 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927476 Gene

Proteins for LOC101927476 Gene

Post-translational modifications for LOC101927476 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927476 Gene

Domains & Families for LOC101927476 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927476 Gene

Function for LOC101927476 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927476 Gene

Localization for LOC101927476 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927476 Gene

Pathways & Interactions for LOC101927476 Gene

PathCards logo

SuperPathways for LOC101927476 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101927476 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927476 Gene

Drugs & Compounds for LOC101927476 Gene

No Compound Related Data Available

Transcripts for LOC101927476 Gene

mRNA/cDNA for LOC101927476 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927476 Gene

No ASD Table

Relevant External Links for LOC101927476 Gene

GeneLoc Exon Structure for
LOC101927476

Expression for LOC101927476 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927476 Gene

genes like me logo Genes that share expression patterns with LOC101927476: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927476 Gene

Orthologs for LOC101927476 Gene

No data available for Orthologs and Evolution for LOC101927476 Gene

Paralogs for LOC101927476 Gene

No data available for Paralogs for LOC101927476 Gene

Variants for LOC101927476 Gene

Additional dbSNP identifiers (rs#s) for LOC101927476 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101927476 Gene

Variant ID Type Subtype PubMed ID
esv33829 CNV loss 17666407

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927476 Gene

Disorders for LOC101927476 Gene

No disorders were found for LOC101927476 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927476 Gene

Publications for LOC101927476 Gene

No publications were found for LOC101927476 Gene.

No data available for Mastermind for LOC101927476 Gene

Products for LOC101927476 Gene

Sources for LOC101927476 Gene