Aliases for LOC101927468 Gene

Subcategory (RNA class) for LOC101927468 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC101927468 Gene

  • Uncharacterized LOC101927468 3
  • NONHSAG002719 94
  • HSALNG0006853 169
  • Lnc-NBPF11-1 170

External Ids for LOC101927468 Gene

Previous GeneCards Identifiers for LOC101927468 Gene

  • GC01U903945
  • GC01M148159

Summaries for LOC101927468 Gene

GeneCards Summary for LOC101927468 Gene

LOC101927468 (Uncharacterized LOC101927468) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LOC101927468 Gene

Additional gene information for LOC101927468 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LOC101927468 Gene

Genomics for LOC101927468 Gene

GeneHancer (GH) Regulatory Elements for LOC101927468 Gene

Promoters and enhancers for LOC101927468 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J148245 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 750.6 +0.8 808 2.1 CEBPG GLIS2 PRDM10 ZBTB20 SCRT2 ZXDB ZNF10 SCRT1 ZBTB17 POLR2A ENSG00000227700 LOC101927468 RF00005-014 TRN-ATT1-1-002 lnc-GPR89B-10-001 lnc-GPR89B-10-002 ENSG00000227733
GH01J148248 Enhancer 0.7 Ensembl 0.6 -2.1 -2130 1.2 GATA3 MYC MAX ZSCAN21 PRDM1 CREB1 ZIC2 CEBPB RFX1 ZBTB17 LOC101927468 lnc-GPR89B-10-001 ENSG00000227733
GH01J148253 Enhancer 1 Ensembl ENCODE 0.4 -7.1 -7143 2 CTCF RAD21 SP7 HNF1A ZNF404 KLF14 CREB1 PKNOX1 ARID2 REST ENSG00000227733 ENSG00000272824 LOC101927468
GH01J148234 Enhancer 0.4 ENCODE 0.4 +12.1 12118 1.5 ZFX CREB1 SIX4 ENSG00000224335 piR-60279-004 LOC101927468 ENSG00000227733
GH01J148221 Enhancer 0.2 Ensembl 0.3 +24.5 24470 2 lnc-GPR89B-4 ENSG00000224335 LOC101927468 ENSG00000227733
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927468 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927468 Gene

Genomic Locations for LOC101927468 Gene
chr1:148,208,093-148,247,071
(GRCh38/hg38)
Size:
38,979 bases
Orientation:
Minus strand

Genomic View for LOC101927468 Gene

Genes around LOC101927468 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927468 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927468 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927468 Gene

Proteins for LOC101927468 Gene

Post-translational modifications for LOC101927468 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927468 Gene

Domains & Families for LOC101927468 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927468 Gene

Function for LOC101927468 Gene

Gene Ontology (GO) - Molecular Function for LOC101927468 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030533 triplet codon-amino acid adaptor activity IEA --
genes like me logo Genes that share ontologies with LOC101927468: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927468 Gene

Localization for LOC101927468 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927468 Gene

Pathways & Interactions for LOC101927468 Gene

PathCards logo

SuperPathways for LOC101927468 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927468 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation IEA --
genes like me logo Genes that share ontologies with LOC101927468: view

No data available for Pathways by source and SIGNOR curated interactions for LOC101927468 Gene

Drugs & Compounds for LOC101927468 Gene

No Compound Related Data Available

Transcripts for LOC101927468 Gene

mRNA/cDNA for LOC101927468 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927468 Gene

No ASD Table

Relevant External Links for LOC101927468 Gene

GeneLoc Exon Structure for
LOC101927468

Expression for LOC101927468 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927468 Gene

genes like me logo Genes that share expression patterns with LOC101927468: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927468 Gene

Orthologs for LOC101927468 Gene

No data available for Orthologs and Evolution for LOC101927468 Gene

Paralogs for LOC101927468 Gene

No data available for Paralogs for LOC101927468 Gene

Variants for LOC101927468 Gene

Sequence variations from dbSNP and Humsavar for LOC101927468 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs10654332 -- 148,240,120(-) /AG intron_variant
rs111280991 -- 148,243,668(-) C/T intron_variant
rs111284516 -- 148,248,780(-) C/T upstream_transcript_variant
rs111322116 -- 148,248,114(-) TTTTTTTTTTT/TTTTTTTTT/TTTTTTTTTT/TTTTTTTTTTTT/TTTTTTTTTTTTT/TTTTTTTTTTTTTTTT upstream_transcript_variant
rs111344707 -- 148,243,627(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927468 Gene

Variant ID Type Subtype PubMed ID
dgv185n106 CNV deletion 24896259
dgv186n106 CNV deletion 24896259
dgv327n100 CNV gain 25217958
dgv336n100 CNV gain+loss 25217958
dgv46e214 CNV gain 21293372
dgv535n54 CNV gain 21841781
dgv66e199 CNV deletion 23128226
esv2569215 CNV gain 19546169
esv2761299 CNV gain+loss 21179565
esv28550 CNV gain 19812545
esv3587450 CNV loss 21293372
nsv1000564 CNV gain 25217958
nsv1003688 CNV gain 25217958
nsv1005055 CNV loss 25217958
nsv1078736 CNV deletion 25765185
nsv1078778 CNV deletion 25765185
nsv1132304 CNV duplication 24896259
nsv509457 CNV insertion 20534489
nsv510962 OTHER complex 20534489
nsv510984 OTHER inversion 20534489
nsv547679 CNV loss 21841781
nsv831448 CNV loss 17160897
nsv946289 CNV duplication 23825009
nsv946290 CNV duplication 23825009
nsv946293 CNV duplication 23825009
nsv946294 CNV duplication 23825009
nsv946322 CNV duplication 23825009
nsv946323 CNV duplication 23825009
nsv946324 CNV duplication 23825009
nsv946841 CNV duplication 23825009
nsv951836 CNV duplication 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927468 Gene

Disorders for LOC101927468 Gene

No disorders were found for LOC101927468 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927468 Gene

Publications for LOC101927468 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LOC101927468 Gene

Products for LOC101927468 Gene

Sources for LOC101927468 Gene