Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC101927468 Gene

Subcategory (RNA class) for LOC101927468 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927468 Gene

  • Uncharacterized LOC101927468 3
  • AC239809.3 5

External Ids for LOC101927468 Gene

Previous GeneCards Identifiers for LOC101927468 Gene

  • GC01U903945

Summaries for LOC101927468 Gene

GeneCards Summary for LOC101927468 Gene

LOC101927468 (Uncharacterized LOC101927468) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927468 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927468 Gene

Genomics for LOC101927468 Gene

GeneHancer (GH) Regulatory Elements for LOC101927468 Gene

Promoters and enhancers for LOC101927468 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I148254 Enhancer 0.8 ENCODE 577.6 -0.1 -53 0.2 ARNT ZSCAN4 MZF1 RAD21 ARID2 ZSCAN5C ZNF143 ZNF214 DEK ZNF654 LOC101927468 GPR89B BCL9 LOC647481 ENSG00000255148 RNU1-120P
GH01I148256 Enhancer 0.7 ENCODE 550.8 -1.6 -1603 0.3 SMARCA5 ESRRA CEBPB GATAD2B CEBPG CTBP1 MAFF GATA3 ZNF512B ZNF316 LOC101927468 RNU1-120P
GH01I148253 Enhancer 0.5 ENCODE 550.8 +1.0 987 0.2 CTBP1 ESRRA RFX1 SOX6 IKZF1 NR4A1 LOC101927468 GC01P148251
GH01I147538 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 56 +714.0 714002 5.8 PKNOX1 FOXA2 ARNT NEUROD1 SIN3A FEZF1 ZNF2 YY1 ZNF213 ZNF302 BCL9 LOC647481 GPR89B LOC101927468 ACP6 ENSG00000234225 ENSG00000227700 PDIA3P1 ENSG00000237188 LINC00624
GH01I148861 Enhancer 0.9 dbSUPER 94 -607.8 -607784 2.5 SMAD1 ZNF529 ZNF195 YBX1 ZNF121 ZNF302 SCRT2 ZNF350 KLF13 ZNF214 LOC101927468 GPR89B ENSG00000255148 ENSG00000227700 HIST2H2BD LOC647481 HIST2H2BC ENSG00000261716 ENSG00000272755 GC01M148879
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101927468 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927468 Gene

Genomic Locations for LOC101927468 Gene
chr1:148,159,213-148,255,012
(GRCh38/hg38)
Size:
95,800 bases
Orientation:
Minus strand

Genomic View for LOC101927468 Gene

Genes around LOC101927468 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927468 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927468 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927468 Gene

Proteins for LOC101927468 Gene

Post-translational modifications for LOC101927468 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927468 Gene

Domains & Families for LOC101927468 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927468 Gene

Function for LOC101927468 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927468 Gene

Localization for LOC101927468 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927468 Gene

Pathways & Interactions for LOC101927468 Gene

SuperPathways for LOC101927468 Gene

No Data Available

Interacting Proteins for LOC101927468 Gene

Gene Ontology (GO) - Biological Process for LOC101927468 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927468 Gene

Drugs & Compounds for LOC101927468 Gene

No Compound Related Data Available

Transcripts for LOC101927468 Gene

mRNA/cDNA for LOC101927468 Gene

(18) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927468 Gene

No ASD Table

Relevant External Links for LOC101927468 Gene

GeneLoc Exon Structure for
LOC101927468

Expression for LOC101927468 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927468 Gene

genes like me logo Genes that share expression patterns with LOC101927468: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927468 Gene

Orthologs for LOC101927468 Gene

Evolution for LOC101927468 Gene

ENSEMBL:
Gene Tree for LOC101927468 (if available)
TreeFam:
Gene Tree for LOC101927468 (if available)

No data available for Orthologs for LOC101927468 Gene

Paralogs for LOC101927468 Gene

No data available for Paralogs for LOC101927468 Gene

Variants for LOC101927468 Gene

Sequence variations from dbSNP and Humsavar for LOC101927468 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs10654332 -- 148,240,120(-) /AG intron_variant
rs111280991 -- 148,243,668(-) C/T intron_variant
rs111284516 -- 148,248,780(-) C/T upstream_transcript_variant
rs111322116 -- 148,248,114(-) TTTTTTTTTTT/TTTTTTTTTT/TTTTTTTTTTTT upstream_transcript_variant
rs111344707 -- 148,243,627(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927468 Gene

Variant ID Type Subtype PubMed ID
dgv185n106 CNV deletion 24896259
dgv186n106 CNV deletion 24896259
dgv327n100 CNV gain 25217958
dgv336n100 CNV gain+loss 25217958
dgv46e214 CNV gain 21293372
dgv535n54 CNV gain 21841781
dgv66e199 CNV deletion 23128226
esv2569215 CNV gain 19546169
esv2761299 CNV gain+loss 21179565
esv28550 CNV gain 19812545
esv3587450 CNV loss 21293372
nsv1000564 CNV gain 25217958
nsv1003688 CNV gain 25217958
nsv1005055 CNV loss 25217958
nsv1078736 CNV deletion 25765185
nsv1078778 CNV deletion 25765185
nsv1132304 CNV duplication 24896259
nsv509457 CNV insertion 20534489
nsv510962 OTHER complex 20534489
nsv510984 OTHER inversion 20534489
nsv547679 CNV loss 21841781
nsv831448 CNV loss 17160897
nsv946289 CNV duplication 23825009
nsv946290 CNV duplication 23825009
nsv946293 CNV duplication 23825009
nsv946294 CNV duplication 23825009
nsv946322 CNV duplication 23825009
nsv946323 CNV duplication 23825009
nsv946324 CNV duplication 23825009
nsv946841 CNV duplication 23825009
nsv951836 CNV duplication 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927468 Gene

Disorders for LOC101927468 Gene

Additional Disease Information for LOC101927468

No disorders were found for LOC101927468 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927468 Gene

Publications for LOC101927468 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC101927468 Gene

Sources for LOC101927468 Gene

Content
Loading form....