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Aliases for LOC101927441 Gene

Subcategory (RNA class) for LOC101927441 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101927441 Gene

  • Uncharacterized LOC101927441 3

External Ids for LOC101927441 Gene

Previous GeneCards Identifiers for LOC101927441 Gene

  • GC01U903705

Summaries for LOC101927441 Gene

GeneCards Summary for LOC101927441 Gene

LOC101927441 (Uncharacterized LOC101927441) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927441 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927441 Gene

Genomics for LOC101927441 Gene

GeneHancer (GH) Regulatory Elements for LOC101927441 Gene

Promoters and enhancers for LOC101927441 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J015406 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.0 2988 11.5 SP1 ELF3 ZFX MNT CBFA2T2 ZNF148 NKRF MLLT1 POLR2A CSDE1 EFHD2 SPEN ENSG00000228140 CTRC ENSG00000233485 ENSG00000237938 FHAD1 RPL22P3 ENSG00000178715 FBXO42
GH01J015423 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -10.0 -9995 5.5 CC2D1A ZKSCAN8 CBFA2T2 ZNF148 MLLT1 TRIM24 ELF1 ZNF639 EGR1 SMARCA4 LOC101927441 GC01M015414 EFHD2
GH01J015421 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -6.3 -6278 1.6 CTCF ELF3 CEBPG SP1 PPARG ZNF644 RXRA CEBPA GATAD2A RXRB LOC101927441 GC01M015414 EFHD2
GH01J015418 Enhancer 0.5 ENCODE dbSUPER 0.7 -4.0 -3997 2 NFIB ENSG00000233485 FHAD1 ENSG00000228140 SPEN LOC101927441 EFHD2 GC01M015414
GH01J015405 Enhancer 0.5 ENCODE dbSUPER 0.4 +9.9 9940 1.3 GLIS1 ENSG00000228140 GC01P015399 LOC101927441
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927441 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927441 Gene

Genomic Locations for LOC101927441 Gene
chr1:15,403,771-15,415,522
(GRCh38/hg38)
Size:
11,752 bases
Orientation:
Minus strand

Genomic View for LOC101927441 Gene

Genes around LOC101927441 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927441 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927441 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927441 Gene

Proteins for LOC101927441 Gene

Post-translational modifications for LOC101927441 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927441 Gene

Domains & Families for LOC101927441 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927441 Gene

Function for LOC101927441 Gene

Phenotypes From GWAS Catalog for LOC101927441 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927441 Gene

Localization for LOC101927441 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927441 Gene

Pathways & Interactions for LOC101927441 Gene

PathCards logo

SuperPathways for LOC101927441 Gene

No Data Available

Interacting Proteins for LOC101927441 Gene

Gene Ontology (GO) - Biological Process for LOC101927441 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927441 Gene

Drugs & Compounds for LOC101927441 Gene

No Compound Related Data Available

Transcripts for LOC101927441 Gene

mRNA/cDNA for LOC101927441 Gene

(1) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927441 Gene

No ASD Table

Relevant External Links for LOC101927441 Gene

GeneLoc Exon Structure for
LOC101927441

Expression for LOC101927441 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927441 Gene

Orthologs for LOC101927441 Gene

No data available for Orthologs and Evolution for LOC101927441 Gene

Paralogs for LOC101927441 Gene

No data available for Paralogs for LOC101927441 Gene

Variants for LOC101927441 Gene

Sequence variations from dbSNP and Humsavar for LOC101927441 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000060969 -- 15,406,962(-) T/C intron_variant
rs1000197308 -- 15,390,032(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000271375 -- 15,411,060(-) C/T genic_upstream_transcript_variant, intron_variant, non_coding_transcript_variant, upstream_transcript_variant
rs1000354094 -- 15,394,991(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000542671 -- 15,395,870(-) G/A/C/T genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927441 Gene

Disorders for LOC101927441 Gene

No disorders were found for LOC101927441 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927441 Gene

Publications for LOC101927441 Gene

No publications were found for LOC101927441 Gene.

No data available for External Links for LOC101927441 Gene

Products for LOC101927441 Gene

Sources for LOC101927441 Gene

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