Aliases for LOC101927420 Gene

Subcategory (RNA class) for LOC101927420 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC101927420 Gene

  • Uncharacterized LOC101927420 3
  • NONHSAG048125.2 91
  • HSALNG0059367 164

External Ids for LOC101927420 Gene

Previous GeneCards Identifiers for LOC101927420 Gene

  • GC07U903529
  • GC07M086790

Summaries for LOC101927420 Gene

GeneCards Summary for LOC101927420 Gene

LOC101927420 (Uncharacterized LOC101927420) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927420 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927420 Gene

Genomics for LOC101927420 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101927420 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J087151 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -1.2 -1150 5.1 CREB1 GATAD2A HNRNPL TEAD4 PRDM10 ZNF629 LEF1 IKZF1 ZNF692 POLR2A DMTF1 ENSG00000224046 LOC101927420 lnc-CROT-4 piR-46827 TMEM243 TP53TG1 DBF4 ENSG00000200397 lnc-TMEM243-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927420 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927420 Gene

Genomic Locations for LOC101927420 Gene
chr7:87,151,423-87,152,493
(GRCh38/hg38)
Size:
1,071 bases
Orientation:
Minus strand
chr7:86,780,739-86,781,736
(GRCh37/hg19)
Size:
998 bases
Orientation:
Minus strand

Genomic View for LOC101927420 Gene

Genes around LOC101927420 on UCSC Golden Path with GeneCards custom track
LOC101927420 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101927420 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927420 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927420 Gene

Proteins for LOC101927420 Gene

Post-translational modifications for LOC101927420 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927420 Gene

Domains & Families for LOC101927420 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927420 Gene

Function for LOC101927420 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927420 Gene

Localization for LOC101927420 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927420 Gene

Pathways & Interactions for LOC101927420 Gene

PathCards logo

SuperPathways for LOC101927420 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927420 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927420 Gene

Drugs & Compounds for LOC101927420 Gene

No Compound Related Data Available

Transcripts for LOC101927420 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927420 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A77178_9606 lncRNA 804 1

RefSeq: NR_136252,

URS0000A775A9_9606 lncRNA 428 1

RefSeq: NR_136253,

URS00009B74F4_9606 lncRNA 907 2

LncBook: HSALNT0125217,

NONCODE: NONHSAT213686.1,

LOC101927420 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101927420 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927420 Gene

No ASD Table

Relevant External Links for LOC101927420 Gene

GeneLoc Exon Structure for
LOC101927420

Expression for LOC101927420 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927420 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927420 Gene

This gene is overexpressed in Testis (x13.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927420

genes like me logo Genes that share expression patterns with LOC101927420: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927420 Gene

Orthologs for LOC101927420 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC101927420 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC463511 30
  • 95.54 (n)
Species where no ortholog for LOC101927420 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

No data available for Evolution for LOC101927420 Gene

Paralogs for LOC101927420 Gene

No data available for Paralogs for LOC101927420 Gene

Variants for LOC101927420 Gene

Additional dbSNP identifiers (rs#s) for LOC101927420 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927420 Gene

Disorders for LOC101927420 Gene

No disorders were found for LOC101927420 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927420 Gene

Publications for LOC101927420 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC101927420 Gene

Products for LOC101927420 Gene

Sources for LOC101927420 Gene