Aliases for LOC101927410 Gene

Subcategory (RNA class) for LOC101927410 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC101927410 Gene

  • Uncharacterized LOC101927410 3
  • Novel Transcript, Antisense To PIEZO2 5
  • NONHSAG023356 94
  • HSALNG0120017 169
  • AP001180.1 5

External Ids for LOC101927410 Gene

Previous GeneCards Identifiers for LOC101927410 Gene

  • GC18U900792

Summaries for LOC101927410 Gene

GeneCards Summary for LOC101927410 Gene

LOC101927410 (Uncharacterized LOC101927410) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927410 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927410 Gene

Genomics for LOC101927410 Gene

GeneHancer (GH) Regulatory Elements for LOC101927410 Gene

Promoters and enhancers for LOC101927410 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J010659 Enhancer 0.7 Ensembl ENCODE 750.6 -1.0 -1032 2.6 IKZF1 IKZF2 JUN PKNOX1 JUND NR2F1 FOSL1 FOS ATF7 LOC101927410 piR-40110-301
GH18J010660 Enhancer 0.2 Ensembl 0.6 -2.7 -2732 0.4 LOC101927410 piR-40110-301
GH18J010658 Enhancer 0.2 Ensembl 0.6 -3.4 -3432 0.6 LOC101927410 piR-40110-301
GH18J010674 Enhancer 0.3 Ensembl 0.4 +12.4 12368 0.2 EZH2 lnc-PPP4R1-22 LOC101927410 PIEZO2
GH18J010668 Enhancer 0.2 Ensembl 0.4 +6.2 6168 0.6 LOC101927410 lnc-PPP4R1-22 PIEZO2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927410 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927410 Gene

Genomic Locations for LOC101927410 Gene
chr18:10,661,933-10,666,887
(GRCh38/hg38)
Size:
4,955 bases
Orientation:
Plus strand
chr18:10,661,930-10,666,884
(GRCh37/hg19)
Size:
4,955 bases
Orientation:
Plus strand

Genomic View for LOC101927410 Gene

Genes around LOC101927410 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927410 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927410 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927410 Gene

Proteins for LOC101927410 Gene

Post-translational modifications for LOC101927410 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927410 Gene

Domains & Families for LOC101927410 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927410 Gene

Function for LOC101927410 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927410 Gene

Localization for LOC101927410 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927410 Gene

Pathways & Interactions for LOC101927410 Gene

PathCards logo

SuperPathways for LOC101927410 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927410 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927410 Gene

Drugs & Compounds for LOC101927410 Gene

No Compound Related Data Available

Transcripts for LOC101927410 Gene

mRNA/cDNA for LOC101927410 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) LncBook transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927410 Gene

No ASD Table

Relevant External Links for LOC101927410 Gene

GeneLoc Exon Structure for
LOC101927410

Expression for LOC101927410 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927410 Gene

genes like me logo Genes that share expression patterns with LOC101927410: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927410 Gene

Orthologs for LOC101927410 Gene

Evolution for LOC101927410 Gene

ENSEMBL:
Gene Tree for LOC101927410 (if available)
TreeFam:
Gene Tree for LOC101927410 (if available)

No data available for Orthologs for LOC101927410 Gene

Paralogs for LOC101927410 Gene

No data available for Paralogs for LOC101927410 Gene

Variants for LOC101927410 Gene

Sequence variations from dbSNP and Humsavar for LOC101927410 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000363953 -- 10,661,230(+) C/T upstream_transcript_variant
rs1000812987 -- 10,660,263(+) T/C upstream_transcript_variant
rs1001099650 -- 10,660,050(+) A/G upstream_transcript_variant
rs1001435604 -- 10,662,716(+) G/A intron_variant
rs1001551314 -- 10,660,965(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927410 Gene

Variant ID Type Subtype PubMed ID
dgv1550n106 CNV deletion 24896259
nsv1057995 CNV gain 25217958
nsv1129331 OTHER inversion 24896259
nsv1153637 OTHER inversion 26484159

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927410 Gene

Disorders for LOC101927410 Gene

No disorders were found for LOC101927410 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927410 Gene

Publications for LOC101927410 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LOC101927410 Gene

Products for LOC101927410 Gene

Sources for LOC101927410 Gene