Aliases for LOC101927378 Gene

Subcategory (RNA class) for LOC101927378 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC101927378 Gene

  • Uncharacterized LOC101927378 3
  • Novel Transcript 5
  • NONHSAG048111 92
  • HSALNG0059305 167
  • AC003984.1 5
  • Lnc-GRM3-2 168

External Ids for LOC101927378 Gene

Previous GeneCards Identifiers for LOC101927378 Gene

  • GC07U903661

Summaries for LOC101927378 Gene

GeneCards Summary for LOC101927378 Gene

LOC101927378 (Uncharacterized LOC101927378) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927378 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927378 Gene

Genomics for LOC101927378 Gene

GeneHancer (GH) Regulatory Elements for LOC101927378 Gene

Promoters and enhancers for LOC101927378 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J084531 Enhancer 0.4 Ensembl 500.7 +0.3 325 1.6 EP300 CEBPB POLR2A RAD21 SP1 LOC101927378 SEMA3A RF00017-6419
GH07J084528 Enhancer 1 Ensembl ENCODE 0.7 -2.5 -2475 2.8 ZNF217 TCF12 FOS CUX1 EP300 GATAD2B CTBP1 OSR2 ZNF316 BRCA1 RPL7P30 lnc-SEMA3A-1 SEMA3A LOC101927378
GH07J084535 Enhancer 0.9 Ensembl ENCODE 0.7 +3.7 3730 2.3 ZNF217 TCF12 RFX1 GATAD2B CTBP1 ESRRA FOXA2 MBD2 FOS ESR1 LOC101927378 RF00017-6419
GH07J084548 Enhancer 0.7 Ensembl ENCODE 0.4 +16.2 16225 2.2 TCF12 TEAD4 CEBPG NR3C1 NANOG CEBPB ATF4 TCF7L2 CHD7 ATF3 SEMA3A RF00017-6419 LOC101927378
GH07J084565 Enhancer 0.2 Ensembl 0.3 +32.8 32825 0.6 RF00017-6419 LOC101927378 piR-32023-223
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927378 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927378 Gene

Genomic Locations for LOC101927378 Gene
chr7:84,532,476-84,584,323
(GRCh38/hg38)
Size:
51,848 bases
Orientation:
Plus strand
chr7:84,161,792-84,213,638
(GRCh37/hg19)
Size:
51,847 bases
Orientation:
Plus strand

Genomic View for LOC101927378 Gene

Genes around LOC101927378 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927378 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927378 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927378 Gene

Proteins for LOC101927378 Gene

Post-translational modifications for LOC101927378 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927378 Gene

Domains & Families for LOC101927378 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927378 Gene

Function for LOC101927378 Gene

Phenotypes From GWAS Catalog for LOC101927378 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927378 Gene

Localization for LOC101927378 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927378 Gene

Pathways & Interactions for LOC101927378 Gene

PathCards logo

SuperPathways for LOC101927378 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101927378 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927378 Gene

Drugs & Compounds for LOC101927378 Gene

No Compound Related Data Available

Transcripts for LOC101927378 Gene

mRNA/cDNA for LOC101927378 Gene

7 RNACentral transcripts :
2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
4 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927378 Gene

No ASD Table

Relevant External Links for LOC101927378 Gene

GeneLoc Exon Structure for
LOC101927378

Expression for LOC101927378 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927378 Gene

genes like me logo Genes that share expression patterns with LOC101927378: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927378 Gene

Orthologs for LOC101927378 Gene

Evolution for LOC101927378 Gene

ENSEMBL:
Gene Tree for LOC101927378 (if available)
TreeFam:
Gene Tree for LOC101927378 (if available)

No data available for Orthologs for LOC101927378 Gene

Paralogs for LOC101927378 Gene

No data available for Paralogs for LOC101927378 Gene

Variants for LOC101927378 Gene

Additional dbSNP identifiers (rs#s) for LOC101927378 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101927378 Gene

Variant ID Type Subtype PubMed ID
dgv11488n54 CNV loss 21841781
dgv422n21 CNV loss 19592680
dgv6519n100 CNV loss 25217958
dgv6520n100 CNV loss 25217958
esv1000224 CNV deletion 20482838
esv3613965 CNV loss 21293372
esv3613966 CNV loss 21293372
esv3613967 CNV loss 21293372
esv6412 CNV gain 19470904
nsv1019542 CNV gain 25217958
nsv1026218 CNV loss 25217958
nsv1161577 CNV deletion 26073780
nsv5821 CNV deletion 18451855
nsv607710 CNV loss 21841781
nsv607714 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927378 Gene

Disorders for LOC101927378 Gene

No disorders were found for LOC101927378 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927378 Gene

Publications for LOC101927378 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 54
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 54

No data available for Mastermind for LOC101927378 Gene

Products for LOC101927378 Gene

Sources for LOC101927378 Gene