LOC101927377 Gene (RNA Gene)

Uncharacterized LOC101927377

GC20P047352
GIFtS:
9

Aliases for LOC101927377 Gene

Subcategory (RNA class) for LOC101927377 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LOC101927377 Gene

  • Uncharacterized LOC101927377 3
  • Novel Transcript, Antisense To ZMYND8 5
  • HSALNG0130534 169
  • NONHSAG031913 94
  • Lnc-NCOA3-3 170
  • AL031666.1 5

External Ids for LOC101927377 Gene

Previous GeneCards Identifiers for LOC101927377 Gene

  • GC20U900746
  • GC20P045983

Summaries for LOC101927377 Gene

GeneCards Summary for LOC101927377 Gene

LOC101927377 (Uncharacterized LOC101927377) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927377 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927377 Gene

Genomics for LOC101927377 Gene

GeneHancer (GH) Regulatory Elements for LOC101927377 Gene

Promoters and enhancers for LOC101927377 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20J047342 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.6 598 21 SP1 FOXA1 LCORL MLX RBPJ SMARCE1 POLR2A USF2 NR2F1 NR2F6 LOC101927377 ZMYND8 NCOA3 ENSG00000229853 SLC35C2 TP53RK ZNF663P ZNF334 MKRN7P RPL35AP
GH20J048127 Enhancer 0.6 Ensembl 5.5 +774.7 774740 0.2 ZFX ZIC2 CTBP1 ZNF512B BMI1 ZBTB26 ZNF207 NONO GATAD2B RFX5 lnc-SULF2-4 NCOA3 ENSG00000229853 CSE1L LOC101927377 ENSG00000287107 lnc-NCOA3-10 piR-50443-241
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927377 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927377 Gene

Genomic Locations for LOC101927377 Gene
chr20:47,352,561-47,354,634
(GRCh38/hg38)
Size:
2,074 bases
Orientation:
Plus strand
chr20:45,981,305-45,983,377
(GRCh37/hg19)
Size:
2,073 bases
Orientation:
Plus strand

Genomic View for LOC101927377 Gene

Genes around LOC101927377 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927377 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927377 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101927377 Gene

Proteins for LOC101927377 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC101927377 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927377 Gene

Domains & Families for LOC101927377 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927377 Gene

Function for LOC101927377 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927377 Gene

Localization for LOC101927377 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927377 Gene

Pathways & Interactions for LOC101927377 Gene

PathCards logo

SuperPathways for LOC101927377 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927377 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927377 Gene

Drugs & Compounds for LOC101927377 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC101927377 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC101927377 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(2) NONCODE transcripts :
(2) LncBook transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927377 Gene

No ASD Table

Relevant External Links for LOC101927377 Gene

GeneLoc Exon Structure for
LOC101927377

Expression for LOC101927377 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927377 Gene

mRNA expression in normal human tissues for LOC101927377 Gene
mRNA expression by GTEx for LOC101927377 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927377 Gene

This gene is overexpressed in Heart - Left Ventricle (x4.3).
genes like me logo Genes that share expression patterns with LOC101927377: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927377 Gene

Orthologs for LOC101927377 Gene

Evolution for LOC101927377 Gene

ENSEMBL:
Gene Tree for LOC101927377 (if available)
TreeFam:
Gene Tree for LOC101927377 (if available)

No data available for Orthologs for LOC101927377 Gene

Paralogs for LOC101927377 Gene

No data available for Paralogs for LOC101927377 Gene

Variants for LOC101927377 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC101927377 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000216291 -- 47,351,595(+) A/G/T upstream_transcript_variant
rs1000390026 -- 47,352,761(+) G/C/T intron_variant
rs1001534241 -- 47,353,587(+) A/G non_coding_transcript_variant
rs1001618168 -- 47,352,339(+) T/G upstream_transcript_variant
rs1003342942 -- 47,353,564(+) C/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927377 Gene

Disorders for LOC101927377 Gene

No disorders were found for LOC101927377 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927377 Gene

Publications for LOC101927377 Gene

No publications were found for LOC101927377 Gene.

No data available for External Links for LOC101927377 Gene

Products for LOC101927377 Gene

Sources for LOC101927377 Gene