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Aliases for LOC101927377 Gene
Subcategory (RNA class) for LOC101927377 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LOC101927377 Gene
External Ids for LOC101927377 Gene
- Entrez Gene: 101927377
- Ensembl: ENSG00000231119
Previous GeneCards Identifiers for LOC101927377 Gene
- GC20U900746
- GC20P045983
Summaries for LOC101927377 Gene
GeneCards Summary for LOC101927377 Gene
LOC101927377 (Uncharacterized LOC101927377) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC101927377 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927377 Gene
Genomics for LOC101927377 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC101927377 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH20J047342 | Promoter/Enhancer | 2.7 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 600.7 | +0.6 | 598 | 21 | SP1 HNRNPL GATAD2A TEAD4 PRDM10 ZNF629 REST TFE3 ZNF512 LEF1 | LOC101927377 ZMYND8 SLC35C2 TP53RK NCOA3 ENSG00000229853 RPL35AP RNU6-497P SULF2 ENSG00000273451 | |
| GH20J048127 | Enhancer | 0.6 | Ensembl | 5.4 | +774.7 | 774740 | 0.2 | ZIC2 ZNF341 ZNF512B BMI1 CTBP1 ZBTB26 ZNF444 ZNF207 GATAD2B NONO | lnc-SULF2-4 LOC101927377 ENSG00000287107 piR-50443-241 SULF2 PREX1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC101927377 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC101927377 Gene
Genomic Locations for LOC101927377 Gene
- chr20:47,352,561-47,354,634
- (GRCh38/hg38)
- Size:
- 2,074 bases
- Orientation:
- Plus strand
- chr20:45,981,305-45,983,377
- (GRCh37/hg19)
- Size:
- 2,073 bases
- Orientation:
- Plus strand
Genomic View for LOC101927377 Gene
Genes around LOC101927377 on UCSC Golden Path with GeneCards custom track
LOC101927377 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 20q13.12 by Entrez Gene
- 20q13.12 by Ensembl
LOC101927377 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC101927377 Gene
Proteins for LOC101927377 Gene
Post-translational modifications for LOC101927377 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC101927377
- Origene Custom Protein Services for LOC101927377
No data available for DME Specific Peptides for LOC101927377 Gene
Domains & Families for LOC101927377 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927377 Gene
Function for LOC101927377 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927377 Gene
Localization for LOC101927377 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927377 Gene
Transcripts for LOC101927377 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927377 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000379253_9606 | lncRNA | 1809 | 4 |
Ensembl: ENST00000413818 (view in UCSC) , LncBook: HSALNT0267992, LNCipedia: lnc-NCOA3-3:1, NONCODE: NONHSAT080052.2, |
| URS00008C1B3D_9606 | lncRNA | 1808 | 1 |
RefSeq: NR_134501, |
| URS00009B4DA0_9606 | lncRNA | 1809 | 2 |
LncBook: HSALNT0267993, NONCODE: NONHSAT188828.1, |
LOC101927377 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC101927377 Gene
- 1 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC101927377 Gene
- GeneLoc Exon Structure for
- LOC101927377
Expression for LOC101927377 Gene
mRNA differential expression in normal tissues according to GTEx for LOC101927377 Gene
This gene is overexpressed in Heart - Left Ventricle (x4.3).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927377
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927377 Gene
Orthologs for LOC101927377 Gene
No data available for Orthologs for LOC101927377 Gene
Paralogs for LOC101927377 Gene
No data available for Paralogs for LOC101927377 Gene
Variants for LOC101927377 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927377 Gene
Disorders for LOC101927377 Gene
No disorders were found for LOC101927377 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927377 Gene
Publications for LOC101927377 Gene
No publications were found for LOC101927377 Gene.
No data available for Mastermind for LOC101927377 Gene
Products for LOC101927377 Gene
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- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
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Sources for LOC101927377 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB