Aliases for LOC101927354 Gene

Subcategory (RNA class) for LOC101927354 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC101927354 Gene

  • Uncharacterized LOC101927354 3
  • Novel Transcript 5
  • HSALNG0056038 167
  • Lnc-C1GALT1-1 168
  • NONHSAG046903 92
  • AC005532.1 5

External Ids for LOC101927354 Gene

Previous GeneCards Identifiers for LOC101927354 Gene

  • GC07U903460
  • GC07P007296

Summaries for LOC101927354 Gene

GeneCards Summary for LOC101927354 Gene

LOC101927354 (Uncharacterized LOC101927354) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927354 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927354 Gene

Genomics for LOC101927354 Gene

GeneHancer (GH) Regulatory Elements for LOC101927354 Gene

Promoters and enhancers for LOC101927354 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J007254 Enhancer 0.5 Ensembl 500.7 -0.1 -53 1 POLR2G GATA3 RBM22 ZNF3 GATA2 SP1 SCRT2 LOC101927354 lnc-MIOS-5
GH07J007351 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.8 +98.3 98317 3.5 ZNF217 CTCF REST CUX1 GATAD2B CTBP1 POLR2A HCFC1 ESRRA ZNF592 LOC101927354 ENSG00000272732 piR-48209-621 HSALNG0056043 COL28A1
GH07J007276 Enhancer 0.3 Ensembl 37.6 +21.1 21147 0.6 POLR2A SMARCA4 LOC101927354 C1GALT1 lnc-C1GALT1-3 ENSG00000236712
GH07J007321 Enhancer 0.9 Ensembl ENCODE 11.5 +67.5 67547 3 ZNF217 ZIC2 CUX1 CTBP1 OSR2 SIN3A ESRRA TCF7L2 MBD2 NR3C1 LOC101927354 piR-33863-082 HSALNG0056043
GH07J007346 Enhancer 0.7 Ensembl ENCODE dbSUPER 12.5 +92.1 92147 1.8 POU5F1 NANOG LOC101927354 C1GALT1 HSALNG0056043 piR-48209-621 COL28A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927354 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927354 Gene

Genomic Locations for LOC101927354 Gene
chr7:7,255,154-7,279,664
(GRCh38/hg38)
Size:
24,511 bases
Orientation:
Plus strand
chr7:7,294,785-7,317,410
(GRCh37/hg19)
Size:
22,626 bases
Orientation:
Plus strand

Genomic View for LOC101927354 Gene

Genes around LOC101927354 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927354 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927354 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927354 Gene

Proteins for LOC101927354 Gene

Post-translational modifications for LOC101927354 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927354 Gene

Domains & Families for LOC101927354 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927354 Gene

Function for LOC101927354 Gene

Phenotypes From GWAS Catalog for LOC101927354 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927354 Gene

Localization for LOC101927354 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927354 Gene

Pathways & Interactions for LOC101927354 Gene

PathCards logo

SuperPathways for LOC101927354 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101927354 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927354 Gene

Drugs & Compounds for LOC101927354 Gene

No Compound Related Data Available

Transcripts for LOC101927354 Gene

mRNA/cDNA for LOC101927354 Gene

10 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
4 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927354 Gene

No ASD Table

Relevant External Links for LOC101927354 Gene

GeneLoc Exon Structure for
LOC101927354

Expression for LOC101927354 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927354 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927354 Gene

This gene is overexpressed in Esophagus - Mucosa (x32.1) and Minor Salivary Gland (x5.0).
genes like me logo Genes that share expression patterns with LOC101927354: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927354 Gene

Orthologs for LOC101927354 Gene

Evolution for LOC101927354 Gene

ENSEMBL:
Gene Tree for LOC101927354 (if available)
TreeFam:
Gene Tree for LOC101927354 (if available)

No data available for Orthologs for LOC101927354 Gene

Paralogs for LOC101927354 Gene

No data available for Paralogs for LOC101927354 Gene

Variants for LOC101927354 Gene

Additional dbSNP identifiers (rs#s) for LOC101927354 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101927354 Gene

Variant ID Type Subtype PubMed ID
dgv6249n100 CNV gain 25217958
dgv6250n100 CNV loss 25217958
esv2662296 CNV deletion 23128226
esv2752174 CNV gain 17911159
esv2759505 CNV loss 17122850
esv3576288 CNV gain 25503493
esv3612068 CNV loss 21293372
esv3612069 CNV gain 21293372
esv3612070 CNV loss 21293372
esv3891032 CNV gain 25118596
nsv1023133 CNV gain 25217958
nsv1027610 CNV loss 25217958
nsv1032974 CNV loss 25217958
nsv464300 CNV gain 19166990
nsv464301 CNV gain 19166990
nsv469770 CNV loss 16826518
nsv523128 CNV loss 19592680
nsv525648 CNV loss 19592680
nsv606033 CNV gain 21841781
nsv606035 CNV gain 21841781
nsv606036 CNV loss 21841781
nsv606037 CNV loss 21841781
nsv606038 CNV loss 21841781
nsv606039 CNV loss 21841781
nsv8042 CNV loss 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927354 Gene

Disorders for LOC101927354 Gene

No disorders were found for LOC101927354 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927354 Gene

Publications for LOC101927354 Gene

  1. Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries. (PMID: 24556642) Zeng Z … Shaffer JR (Caries research 2014) 3 54
  2. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (PMID: 22589738) Fox CS … Borecki IB (PLoS genetics 2012) 3 54

No data available for Mastermind for LOC101927354 Gene

Products for LOC101927354 Gene

Sources for LOC101927354 Gene