Aliases for LOC101927342 Gene

Subcategory (RNA class) for LOC101927342 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101927342 Gene

  • Uncharacterized LOC101927342 3
  • NONHSAG001854.2 91
  • HSALNG0004541 164
  • Lnc-MSH4-1 165

External Ids for LOC101927342 Gene

Previous GeneCards Identifiers for LOC101927342 Gene

  • GC01U903675
  • GC01P076011

Summaries for LOC101927342 Gene

GeneCards Summary for LOC101927342 Gene

LOC101927342 (Uncharacterized LOC101927342) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927342 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927342 Gene

Genomics for LOC101927342 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101927342 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J075932 Promoter 0.4 EPDnew 0.7 +3.7 3740 0.1 ATF2 ASB17 LOC101927342 ENSG00000225605 MSH4
GH01J075964 Enhancer 0.7 Ensembl ENCODE 0.3 +35.9 35904 1.2 ZNF341 JUND ZFHX2 FOSL2 PRDM6 GLIS1 KLF1 EGR2 ZNF362 ZNF384 MSH4 ACADM RABGGTB piR-50968-004 ASB17 ENSG00000225605 LOC101927342 LOC105378806 ST6GALNAC3
GH01J075943 Enhancer 0.4 Ensembl 0.4 +14.9 14916 0.4 NR2F1 MAX BHLHE40 IKZF1 ASB17 piR-35312-003 LOC101927342 ENSG00000225605 ST6GALNAC3
GH01J075954 Enhancer 0.5 Ensembl 0.3 +26.1 26069 0.6 NFE2 ZNF316 MAFK MAFG JUNB JUND NFIL3 MAFF EMSY MSH4 piR-35312-003 piR-50968-004 ASB17 ENSG00000225605 LOC101927342 ST6GALNAC3
GH01J075969 Enhancer 0.5 Ensembl ENCODE 0.3 +41.3 41264 0.5 GABPA ZNF623 MSH4 piR-50968-004 LOC105378806 ASB17 LOC101927342 ENSG00000225605 ST6GALNAC3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927342 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927342 Gene

Genomic Locations for LOC101927342 Gene
chr1:75,928,684-76,019,357
(GRCh38/hg38)
Size:
90,674 bases
Orientation:
Plus strand

Genomic View for LOC101927342 Gene

Genes around LOC101927342 on UCSC Golden Path with GeneCards custom track
LOC101927342 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101927342 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927342 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927342 Gene

Proteins for LOC101927342 Gene

Post-translational modifications for LOC101927342 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927342 Gene

Domains & Families for LOC101927342 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927342 Gene

Function for LOC101927342 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927342 Gene

Localization for LOC101927342 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927342 Gene

Pathways & Interactions for LOC101927342 Gene

PathCards logo

SuperPathways for LOC101927342 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927342 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927342 Gene

Drugs & Compounds for LOC101927342 Gene

No Compound Related Data Available

Transcripts for LOC101927342 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927342 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000005A767_9606 lncRNA 369 3

RefSeq: NR_125939,

LNCipedia: lnc-MSH4-1:4,

NONCODE: NONHSAT004008.2,

URS00009B82EC_9606 lncRNA 964 2

LncBook: HSALNT0009122,

NONCODE: NONHSAT149222.1,

URS00009C60C9_9606 lncRNA 656 2

LncBook: HSALNT0009128,

LNCipedia: lnc-MSH4-1:3,

URS00009AE6CC_9606 lncRNA 369 2

LncBook: HSALNT0009130,

NONCODE: NONHSAT149223.1,

LOC101927342 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101927342 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927342 Gene

No ASD Table

Relevant External Links for LOC101927342 Gene

GeneLoc Exon Structure for
LOC101927342

Expression for LOC101927342 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927342 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927342

genes like me logo Genes that share expression patterns with LOC101927342: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927342 Gene

Orthologs for LOC101927342 Gene

No data available for Orthologs and Evolution for LOC101927342 Gene

Paralogs for LOC101927342 Gene

No data available for Paralogs for LOC101927342 Gene

Variants for LOC101927342 Gene

Additional dbSNP identifiers (rs#s) for LOC101927342 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927342 Gene

Disorders for LOC101927342 Gene

No disorders were found for LOC101927342 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927342 Gene

Publications for LOC101927342 Gene

  1. Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity. (PMID: 23449627) Cousminer DL … Early Growth Genetics (EGG) Consortium (Human molecular genetics 2013) 3
  2. A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality. (PMID: 20691247) Verweij KJ … Wray NR (Biological psychology 2010) 3

No data available for Mastermind for LOC101927342 Gene

Products for LOC101927342 Gene

Sources for LOC101927342 Gene