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Aliases for LOC101927300 Gene

Subcategory (RNA class) for LOC101927300 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC101927300 Gene

  • Uncharacterized LOC101927300 3
  • AL391684.1 5

External Ids for LOC101927300 Gene

Previous GeneCards Identifiers for LOC101927300 Gene

  • GC10U901773

Summaries for LOC101927300 Gene

GeneCards Summary for LOC101927300 Gene

LOC101927300 (Uncharacterized LOC101927300) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927300 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927300 Gene

Genomics for LOC101927300 Gene

GeneHancer (GH) Regulatory Elements for LOC101927300 Gene

Promoters and enhancers for LOC101927300 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I099429 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 555.3 -0.6 -562 3.2 PKNOX1 SMAD1 ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B ZNF143 FOS LOC101927300 GC10P099431 GOT1 CWF19L1 CHUK HPS1 PHBP9 SLC25A28 DNMBP PIR44588
GH10I100369 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 13.5 +941.3 941253 6.8 MLX FEZF1 DMAP1 YY1 ZNF143 ZNF548 SP3 NFYC MEF2D GLIS1 OLMALINC PHBP9 SEC31B EBAG9P1 LOC101927300 SCD ENSG00000231188 CHUK ENSG00000272572 HIF1AN
GH10I100178 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.8 +752.0 751980 8.7 PKNOX1 FOXA2 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B ERLIN1 BLOC1S2 CWF19L1 EBAG9P1 PHBP9 MRPL43 CHUK ENSG00000236308 ENSG00000272572 LOC101927300
GH10I099394 Enhancer 1.1 Ensembl ENCODE 19.6 -35.2 -35243 2.7 FOXA2 ARID4B FEZF1 ZNF48 ETS1 FOS PAF1 RXRA SP5 NFYC LOC101927300 GOT1 CNNM1 NKX2-3 PIR44588
GH10I099391 Enhancer 0.9 Ensembl ENCODE 18.5 -38.5 -38466 2.2 CTCF SAP130 RB1 ZNF2 RAD21 TEAD3 SCRT2 SMC3 ZNF143 ZNF444 LOC101927300 GOT1 CNNM1 NKX2-3 PIR44588
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC101927300 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927300 Gene

Genomic Locations for LOC101927300 Gene
chr10:99,431,191-99,461,743
(GRCh38/hg38)
Size:
30,553 bases
Orientation:
Plus strand

Genomic View for LOC101927300 Gene

Genes around LOC101927300 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927300 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927300 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927300 Gene

Proteins for LOC101927300 Gene

Post-translational modifications for LOC101927300 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927300 Gene

Domains & Families for LOC101927300 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927300 Gene

Function for LOC101927300 Gene

Phenotypes From GWAS Catalog for LOC101927300 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927300 Gene

Localization for LOC101927300 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927300 Gene

Pathways & Interactions for LOC101927300 Gene

SuperPathways for LOC101927300 Gene

No Data Available

Interacting Proteins for LOC101927300 Gene

Gene Ontology (GO) - Biological Process for LOC101927300 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927300 Gene

Drugs & Compounds for LOC101927300 Gene

No Compound Related Data Available

Transcripts for LOC101927300 Gene

mRNA/cDNA for LOC101927300 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927300 Gene

No ASD Table

Relevant External Links for LOC101927300 Gene

GeneLoc Exon Structure for
LOC101927300

Expression for LOC101927300 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927300 Gene

genes like me logo Genes that share expression patterns with LOC101927300: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927300 Gene

Orthologs for LOC101927300 Gene

Evolution for LOC101927300 Gene

ENSEMBL:
Gene Tree for LOC101927300 (if available)
TreeFam:
Gene Tree for LOC101927300 (if available)

No data available for Orthologs for LOC101927300 Gene

Paralogs for LOC101927300 Gene

No data available for Paralogs for LOC101927300 Gene

Variants for LOC101927300 Gene

Sequence variations from dbSNP and Humsavar for LOC101927300 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000322922 -- 99,430,496(+) C/A/T upstream_transcript_variant
rs1000388593 -- 99,437,501(+) G/A non_coding_transcript_variant
rs1000465667 -- 99,437,157(+) C/A non_coding_transcript_variant
rs1000671528 -- 99,435,822(+) C/T non_coding_transcript_variant
rs1000819937 -- 99,437,211(+) C/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927300 Gene

Disorders for LOC101927300 Gene

No disorders were found for LOC101927300 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927300 Gene

Publications for LOC101927300 Gene

No publications were found for LOC101927300 Gene.

Products for LOC101927300 Gene

Sources for LOC101927300 Gene

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