Aliases for LOC101927267 Gene

Subcategory (RNA class) for LOC101927267 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LOC101927267 Gene

  • Uncharacterized LOC101927267 3
  • Novel Transcript, Antisense To PRPH 5
  • HSALNG0090932 169
  • NONHSAG011092 94
  • HSALNG0090934 169
  • Lnc-C1QL4-1 170
  • AC125611.4 5

External Ids for LOC101927267 Gene

Previous GeneCards Identifiers for LOC101927267 Gene

  • GC12U901789
  • GC12M049292

Summaries for LOC101927267 Gene

GeneCards Summary for LOC101927267 Gene

LOC101927267 (Uncharacterized LOC101927267) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927267 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927267 Gene

Genomics for LOC101927267 Gene

GeneHancer (GH) Regulatory Elements for LOC101927267 Gene

Promoters and enhancers for LOC101927267 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927267 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927267 Gene

Genomic Locations for LOC101927267 Gene
chr12:49,285,749-49,324,576
(GRCh38/hg38)
Size:
38,828 bases
Orientation:
Minus strand
chr12:49,686,414-49,718,359
(GRCh37/hg19)
Size:
31,946 bases
Orientation:
Minus strand

Genomic View for LOC101927267 Gene

Genes around LOC101927267 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927267 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927267 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927267 Gene

Proteins for LOC101927267 Gene

Post-translational modifications for LOC101927267 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927267 Gene

Domains & Families for LOC101927267 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927267 Gene

Function for LOC101927267 Gene

Phenotypes From GWAS Catalog for LOC101927267 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927267 Gene

Localization for LOC101927267 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927267 Gene

Pathways & Interactions for LOC101927267 Gene

PathCards logo

SuperPathways for LOC101927267 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927267 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927267 Gene

Drugs & Compounds for LOC101927267 Gene

No Compound Related Data Available

Transcripts for LOC101927267 Gene

mRNA/cDNA for LOC101927267 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(4) LncBook transcripts :
(6) NONCODE transcripts :
(5) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927267 Gene

No ASD Table

Relevant External Links for LOC101927267 Gene

GeneLoc Exon Structure for
LOC101927267

Expression for LOC101927267 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927267 Gene

genes like me logo Genes that share expression patterns with LOC101927267: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927267 Gene

Orthologs for LOC101927267 Gene

Evolution for LOC101927267 Gene

ENSEMBL:
Gene Tree for LOC101927267 (if available)
TreeFam:
Gene Tree for LOC101927267 (if available)

No data available for Orthologs for LOC101927267 Gene

Paralogs for LOC101927267 Gene

No data available for Paralogs for LOC101927267 Gene

Variants for LOC101927267 Gene

Sequence variations from dbSNP and Humsavar for LOC101927267 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs58599399 risk-factor, not-provided, uncertain-significance, Amyotrophic lateral sclerosis, susceptibility to, not provided, not specified 49,295,621(-) G/A/T non_coding_transcript_variant
rs73112142 uncertain-significance, not provided 49,297,274(-) G/A non_coding_transcript_variant
rs112146976 not-provided, not provided 49,297,620(-) C/A non_coding_transcript_variant
rs200141011 not-provided, not provided 49,297,604(-) C/A non_coding_transcript_variant
rs2070760 not-provided, not provided 49,296,554(-) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927267 Gene

Variant ID Type Subtype PubMed ID
dgv1497n100 CNV gain 25217958
dgv274e214 CNV gain 21293372
esv25113 CNV gain 19812545
esv2677658 CNV deletion 23128226
esv2745864 CNV deletion 23290073
esv3549181 CNV deletion 23714750
esv3581571 CNV gain 25503493
esv3581583 CNV gain 25503493
esv3629456 CNV loss 21293372
nsv558834 CNV gain 21841781
nsv826367 CNV gain 20364138
nsv952175 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927267 Gene

Disorders for LOC101927267 Gene

No disorders were found for LOC101927267 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927267 Gene

Publications for LOC101927267 Gene

No publications were found for LOC101927267 Gene.

No data available for External Links for LOC101927267 Gene

Products for LOC101927267 Gene

Sources for LOC101927267 Gene