Aliases for LOC101927253 Gene

Data sources for LOC101927253 Gene:

RNA type for LOC101927253 Gene

lncRNA

Aliases for LOC101927253 Gene

External Ids for LOC101927253 Gene

Previous GeneCards Identifiers for LOC101927253 Gene

  • GC17U901961
  • GC17M048705

Summaries for LOC101927253 Gene

GeneCards Summary for LOC101927253 Gene

LOC101927253 (Uncharacterized LOC101927253) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927253 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927253 Gene

Genomics for LOC101927253 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101927253 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927253 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927253 Gene

Latest Assembly
chr17:50,627,030-50,631,991
(GRCh38/hg38)
Size:
4,962 bases
Orientation:
Minus strand

Previous Assembly
chr17:48,704,393-48,709,301
(GRCh37/hg19 by Ensembl)
Size:
4,909 bases
Orientation:
Minus strand

Genomic View for LOC101927253 Gene

Genes around LOC101927253 on UCSC Golden Path with GeneCards custom track
LOC101927253 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101927253 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927253 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927253 Gene

Proteins for LOC101927253 Gene

Post-translational modifications for LOC101927253 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927253 Gene

Domains & Families for LOC101927253 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927253 Gene

Function for LOC101927253 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927253 Gene

Localization for LOC101927253 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927253 Gene

Pathways & Interactions for LOC101927253 Gene

PathCards logo

SuperPathways for LOC101927253 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927253 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927253 Gene

Drugs & Compounds for LOC101927253 Gene

No Compound Related Data Available

Transcripts for LOC101927253 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927253 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000007A135_9606 lncRNA 510 3

Ensembl: ENST00000502435 (view in UCSC) ,

LNCipedia: lnc-ANKRD40-2:1,

NONCODE: NONHSAT054705.2,

URS00009B11AB_9606 lncRNA 510 2

LncBook: HSALNT0242425,

NONCODE: NONHSAT176347.1,

URS0000EC03FE_9606 lncRNA 561 1

LncBook: HSALNT0242426,

LOC101927253 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101927253 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927253 Gene

No ASD Table

Relevant External Links for LOC101927253 Gene

GeneLoc Exon Structure for
LOC101927253

Expression for LOC101927253 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927253 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927253 Gene

This gene is overexpressed in Brain - Cerebellum (x10.7) and Brain - Cortex (x5.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927253

genes like me logo Genes that share expression patterns with LOC101927253: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927253 Gene

Orthologs for LOC101927253 Gene

Evolution for LOC101927253 Gene

ENSEMBL:
Gene Tree for LOC101927253 (if available)
TreeFam:
Gene Tree for LOC101927253 (if available)

No data available for Orthologs for LOC101927253 Gene

Paralogs for LOC101927253 Gene

No data available for Paralogs for LOC101927253 Gene

Variants for LOC101927253 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101927253 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927253 Gene

Disorders for LOC101927253 Gene

No disorders were found for LOC101927253 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927253 Gene

Publications for LOC101927253 Gene

No publications were found for LOC101927253 Gene.

No data available for Mastermind for LOC101927253 Gene

Products for LOC101927253 Gene

Sources for LOC101927253 Gene