Aliases for LOC101927227 Gene

Subcategory (RNA class) for LOC101927227 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101927227 Gene

  • Uncharacterized LOC101927227 3
  • Novel Transcript, Antisense To A Novel Protein 5
  • NONHSAG018636.2 91
  • HSALNG0109641 164
  • Lnc-CPPED1-8 165
  • AC007598.2 5

External Ids for LOC101927227 Gene

Previous GeneCards Identifiers for LOC101927227 Gene

  • GC16U901500

Summaries for LOC101927227 Gene

GeneCards Summary for LOC101927227 Gene

LOC101927227 (Uncharacterized LOC101927227) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927227 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927227 Gene

Genomics for LOC101927227 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101927227 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J012372 Enhancer 0.2 FANTOM5 600.7 -0.1 -56 0.1 ENSG00000260723 ENSG00000278979 LOC105371087 LOC101927227 ENSG00000238685 SNX29 CPPED1
GH16J012366 Enhancer 0.3 Ensembl 0.4 +5.9 5897 1 PRDM1 SPI1 SNX29 piR-61945-175 LOC101927227 piR-51107 CPPED1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927227 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927227 Gene

Genomic Locations for LOC101927227 Gene
chr16:12,366,155-12,372,598
(GRCh38/hg38)
Size:
6,444 bases
Orientation:
Minus strand
chr16:12,460,839-12,466,439
(GRCh37/hg19)
Size:
5,601 bases
Orientation:
Minus strand

Genomic View for LOC101927227 Gene

Genes around LOC101927227 on UCSC Golden Path with GeneCards custom track
LOC101927227 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101927227 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927227 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927227 Gene

Proteins for LOC101927227 Gene

Post-translational modifications for LOC101927227 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927227 Gene

Domains & Families for LOC101927227 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927227 Gene

Function for LOC101927227 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927227 Gene

Localization for LOC101927227 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927227 Gene

Pathways & Interactions for LOC101927227 Gene

PathCards logo

SuperPathways for LOC101927227 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927227 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927227 Gene

Drugs & Compounds for LOC101927227 Gene

No Compound Related Data Available

Transcripts for LOC101927227 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927227 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000022D3DA_9606 lncRNA 539 2

Ensembl: ENST00000569490 (view in UCSC) ,

LNCipedia: lnc-CPPED1-8:2,

URS00008BED16_9606 lncRNA 1382 2

LNCipedia: lnc-CPPED1-8:1,

NONCODE: NONHSAT140620.2,

URS00009AD574_9606 lncRNA 441 2

LncBook: HSALNT0227804,

NONCODE: NONHSAT173608.1,

LOC101927227 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927227 Gene

No ASD Table

Relevant External Links for LOC101927227 Gene

GeneLoc Exon Structure for
LOC101927227

No data available for mRNA/cDNA for LOC101927227 Gene

Expression for LOC101927227 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927227 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927227 Gene

This gene is overexpressed in Testis (x49.8).
genes like me logo Genes that share expression patterns with LOC101927227: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927227 Gene

Orthologs for LOC101927227 Gene

Evolution for LOC101927227 Gene

ENSEMBL:
Gene Tree for LOC101927227 (if available)
TreeFam:
Gene Tree for LOC101927227 (if available)

No data available for Orthologs for LOC101927227 Gene

Paralogs for LOC101927227 Gene

No data available for Paralogs for LOC101927227 Gene

Variants for LOC101927227 Gene

Additional dbSNP identifiers (rs#s) for LOC101927227 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927227 Gene

Disorders for LOC101927227 Gene

Additional Disease Information for LOC101927227

No disorders were found for LOC101927227 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927227 Gene

Publications for LOC101927227 Gene

No publications were found for LOC101927227 Gene.

No data available for Mastermind for LOC101927227 Gene

Products for LOC101927227 Gene

Sources for LOC101927227 Gene