Aliases for LOC101927188 Gene

Subcategory (RNA class) for LOC101927188 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC101927188 Gene

  • Uncharacterized LOC101927188 3
  • Novel Transcript, Antisense To LAMA1 5
  • NONHSAG023289 94
  • HSALNG0119824 169
  • AP002409.1 5

External Ids for LOC101927188 Gene

Previous GeneCards Identifiers for LOC101927188 Gene

  • GC18U900790

Summaries for LOC101927188 Gene

GeneCards Summary for LOC101927188 Gene

LOC101927188 (Uncharacterized LOC101927188) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC101927188 include Poretti-Boltshauser Syndrome.

Additional gene information for LOC101927188 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927188 Gene

Genomics for LOC101927188 Gene

GeneHancer (GH) Regulatory Elements for LOC101927188 Gene

Promoters and enhancers for LOC101927188 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J006949 Enhancer 0.6 Ensembl ENCODE 0.6 -4.4 -4377 2.6 FOXA2 FEZF1 THRB EMSY LOC101927188 piR-35674-229 LAMA1
GH18J006960 Enhancer 0.6 Ensembl ENCODE 0.4 +6.4 6447 1.4 HLF CEBPG ZNF146 LOC101927188 lnc-L3MBTL4-3 LAMA1
GH18J006948 Enhancer 0.5 ENCODE 0.4 -5.9 -5881 0.2 MAFK ZNF316 FOXA2 THRB EMSY piR-35674-229 LOC101927188 LAMA1
GH18J006947 Enhancer 0.3 Ensembl ENCODE 0.4 -6.9 -6927 1.3 piR-35674-229 LOC101927188 LAMA1
GH18J006963 Enhancer 0.2 Ensembl 0.4 +8.6 8624 0.2 LOC101927188 lnc-L3MBTL4-3 LAMA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927188 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927188 Gene

Genomic Locations for LOC101927188 Gene
chr18:6,954,677-6,957,419
(GRCh38/hg38)
Size:
2,743 bases
Orientation:
Plus strand
chr18:6,954,676-6,957,418
(GRCh37/hg19)
Size:
2,743 bases
Orientation:
Plus strand

Genomic View for LOC101927188 Gene

Genes around LOC101927188 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927188 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927188 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927188 Gene

Proteins for LOC101927188 Gene

Post-translational modifications for LOC101927188 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927188 Gene

Domains & Families for LOC101927188 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927188 Gene

Function for LOC101927188 Gene

Phenotypes From GWAS Catalog for LOC101927188 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927188 Gene

Localization for LOC101927188 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927188 Gene

Pathways & Interactions for LOC101927188 Gene

PathCards logo

SuperPathways for LOC101927188 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927188 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927188 Gene

Drugs & Compounds for LOC101927188 Gene

No Compound Related Data Available

Transcripts for LOC101927188 Gene

mRNA/cDNA for LOC101927188 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) LncBook transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927188 Gene

No ASD Table

Relevant External Links for LOC101927188 Gene

GeneLoc Exon Structure for
LOC101927188

Expression for LOC101927188 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927188 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927188 Gene

This gene is overexpressed in Testis (x8.0) and Pancreas (x7.5).
genes like me logo Genes that share expression patterns with LOC101927188: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927188 Gene

Orthologs for LOC101927188 Gene

Evolution for LOC101927188 Gene

ENSEMBL:
Gene Tree for LOC101927188 (if available)
TreeFam:
Gene Tree for LOC101927188 (if available)

No data available for Orthologs for LOC101927188 Gene

Paralogs for LOC101927188 Gene

No data available for Paralogs for LOC101927188 Gene

Variants for LOC101927188 Gene

Sequence variations from dbSNP and Humsavar for LOC101927188 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1555643185 likely-pathogenic, Poretti-Boltshauser syndrome 6,956,662(+) GCTTGCTG/GCTTGCTGCTTGCTG non_coding_transcript_variant
rs587777678 pathogenic, Poretti-Boltshauser syndrome 6,956,768(+) AGGTAGAAACAAGAG/AG non_coding_transcript_variant
rs773457070 likely-pathogenic, not provided 6,955,368(+) G/A/C/T non_coding_transcript_variant
rs149000406 uncertain-significance, not provided 6,956,751(+) T/C non_coding_transcript_variant
rs1000883496 -- 6,955,632(+) G/A/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927188 Gene

Disorders for LOC101927188 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC101927188 Gene - From: GeneCards

Disorder Aliases PubMed IDs
poretti-boltshauser syndrome
  • ptbhs
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC101927188: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927188 Gene

Publications for LOC101927188 Gene

No publications were found for LOC101927188 Gene.

No data available for External Links for LOC101927188 Gene

Products for LOC101927188 Gene

Sources for LOC101927188 Gene