Aliases for LOC101927166 Gene

Data sources for LOC101927166 Gene:

RNA type for LOC101927166 Gene

lncRNA

Aliases for LOC101927166 Gene

External Ids for LOC101927166 Gene

Previous GeneCards Identifiers for LOC101927166 Gene

  • GC17U901828

Summaries for LOC101927166 Gene

GeneCards Summary for LOC101927166 Gene

LOC101927166 (Uncharacterized LOC101927166) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927166 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927166 Gene

Genomics for LOC101927166 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101927166 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J048444 Enhancer 0.6 ENCODE dbSUPER 250.7 +0.1 137 1.4 ZBTB40 ZBTB33 GABPB1 GABPA ZBTB11 MLLT1 LOC101927166 SKAP1 HOXB1 HSALNG0117094-001
GH17J048437 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -4.2 -4235 5.5 BCLAF1 SP1 ZNF207 NCOR1 MYC IKZF1 ZNF592 ATF2 ZSCAN16 NFIC HSALNG0117093 SKAP1 ENSG00000200538 HOXB1 HOXB2 SP2 SNX11 CDK5RAP3 LOC101927166
GH17J048457 Enhancer 1 ENCODE dbSUPER 0.4 +12.6 12612 0.2 BCLAF1 ZNF654 MYC ZNF592 CEBPA CTCF REST TRIM22 BHLHE40 ZEB1 HSALNG0117094-001 SCRN2 ENSG00000264451 LOC101927166 SKAP1 HOXB1
GH17J048452 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 0.4 +9.0 9040 1.8 MTA3 ZNF266 IKZF2 ZBTB17 RUNX3 ETV6 SKAP1 SP2 MRPL45P2 ENSG00000264701 UBE2Z ENSG00000266601 CDK5RAP3 HOXB2 HSALNG0117094-001 LOC101927166
GH17J048456 Enhancer 0.9 ENCODE dbSUPER 0.4 +12.0 11962 0.2 ZNF600 REST BHLHE40 MNT RAD51 KLF9 USF2 ZBTB48 PKNOX1 MAX HSALNG0117094-001 LOC101927166 SKAP1 HOXB1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927166 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927166 Gene

Latest Assembly
chr17:48,444,832-48,466,040
(GRCh38/hg38)
Size:
21,209 bases
Orientation:
Plus strand

Previous Assembly
chr17:46,522,195-46,543,402
(GRCh37/hg19 by Entrez Gene)
Size:
21,208 bases
Orientation:
Plus strand

Genomic View for LOC101927166 Gene

Genes around LOC101927166 on UCSC Golden Path with GeneCards custom track
LOC101927166 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101927166 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927166 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927166 Gene

Proteins for LOC101927166 Gene

Post-translational modifications for LOC101927166 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927166 Gene

Domains & Families for LOC101927166 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927166 Gene

Function for LOC101927166 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927166 Gene

Localization for LOC101927166 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927166 Gene

Pathways & Interactions for LOC101927166 Gene

PathCards logo

SuperPathways for LOC101927166 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927166 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927166 Gene

Drugs & Compounds for LOC101927166 Gene

No Compound Related Data Available

Transcripts for LOC101927166 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927166 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075CF97_9606 lncRNA 2265 4

RefSeq: NR_110804,

LncBook: HSALNT0241891,

LNCipedia: lnc-PRAC2-3:1,

NONCODE: NONHSAT175296.1,

URS00008B9917_9606 lncRNA 1080 3

LncBook: HSALNT0241905,

LNCipedia: lnc-PRAC2-3:2,

NONCODE: NONHSAT054397.2,

URS00009C10D5_9606 lncRNA 223 2

LncBook: HSALNT0241902,

NONCODE: NONHSAT175298.1,

URS0000EC0E6A_9606 lncRNA 5002 1

LncBook: HSALNT0241893,

URS0001BECE5E_9606 lncRNA 5002 1

LncBook: HSALNT0241893,

LOC101927166 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101927166 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927166 Gene

No ASD Table

Relevant External Links for LOC101927166 Gene

GeneLoc Exon Structure for
LOC101927166

Expression for LOC101927166 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927166 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927166

genes like me logo Genes that share expression patterns with LOC101927166: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927166 Gene

Orthologs for LOC101927166 Gene

No data available for Orthologs and Evolution for LOC101927166 Gene

Paralogs for LOC101927166 Gene

No data available for Paralogs for LOC101927166 Gene

Variants for LOC101927166 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101927166 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101927166 Gene

Variant ID Type Subtype PubMed ID
esv2761960 CNV gain 21179565
nsv833469 CNV loss 17160897

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927166 Gene

Disorders for LOC101927166 Gene

No disorders were found for LOC101927166 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927166 Gene

Publications for LOC101927166 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101927166 Gene

Products for LOC101927166 Gene

Sources for LOC101927166 Gene