LOC101927164 Gene (RNA Gene)

Uncharacterized LOC101927164

GC01P224219
GIFtS:
9
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Aliases for LOC101927164 Gene

Data sources for LOC101927164 Gene:

Subcategory (RNA class) for LOC101927164 Gene

lncRNA

Aliases for LOC101927164 Gene

External Ids for LOC101927164 Gene

Previous GeneCards Identifiers for LOC101927164 Gene

  • GC01U903986

Summaries for LOC101927164 Gene

GeneCards Summary for LOC101927164 Gene

LOC101927164 (Uncharacterized LOC101927164) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927164 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927164 Gene

Genomics for LOC101927164 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC101927164 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927164 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927164 Gene

Latest Assembly
chr1:224,217,845-224,228,910
(GRCh38/hg38)
Size:
11,066 bases
Orientation:
Plus strand

Previous Assembly
chr1:224,407,315-224,415,745
(GRCh37/hg19 by Entrez Gene)
Size:
8,431 bases
Orientation:
Plus strand

chr1:224,407,315-224,415,745
(GRCh37/hg19 by Ensembl)
Size:
8,431 bases
Orientation:
Plus strand

Genomic View for LOC101927164 Gene

Genes around LOC101927164 on UCSC Golden Path with GeneCards custom track
LOC101927164 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101927164 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927164 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101927164 Gene

Proteins for LOC101927164 Gene

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Post-translational modifications for LOC101927164 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927164 Gene

Domains & Families for LOC101927164 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927164 Gene

Function for LOC101927164 Gene

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  3. miRNA products for research
  4. Inhibitory RNAs for research
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  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927164 Gene

Localization for LOC101927164 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927164 Gene

Pathways & Interactions for LOC101927164 Gene

PathCards logo

SuperPathways for LOC101927164 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927164 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927164 Gene

Drugs & Compounds for LOC101927164 Gene

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No Compound Related Data Available

Transcripts for LOC101927164 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927164 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005ADEAB_9606 lncRNA 1323 3

Ensembl: ENST00000420350 (view in UCSC) ,

LncBook: HSALNT0022820,

NONCODE: NONHSAT009784.2,

URS000075C55D_9606 lncRNA 1323 1

RefSeq: NR_110668,

URS00009B1DD3_9606 lncRNA 1323 2

LncBook: HSALNT0022821,

NONCODE: NONHSAT150642.1,

URS0001BE618D_9606 lncRNA 3543 1

LncBook: HSALNT0022819,

URS0001BE2C69_9606 lncRNA 1323 1

LncBook: HSALNT0022821,

LOC101927164 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101927164 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927164 Gene

No ASD Table

Relevant External Links for LOC101927164 Gene

GeneLoc Exon Structure for
LOC101927164

Expression for LOC101927164 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927164 Gene

mRNA expression in normal human tissues for LOC101927164 Gene
mRNA expression by GTEx for LOC101927164 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927164

genes like me logo Genes that share expression patterns with LOC101927164: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927164 Gene

Orthologs for LOC101927164 Gene

Evolution for LOC101927164 Gene

ENSEMBL:
Gene Tree for LOC101927164 (if available)
TreeFam:
Gene Tree for LOC101927164 (if available)

No data available for Orthologs for LOC101927164 Gene

Paralogs for LOC101927164 Gene

No data available for Paralogs for LOC101927164 Gene

Variants for LOC101927164 Gene

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dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101927164 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101927164 Gene

Variant ID Type Subtype PubMed ID
nsv832692 CNV gain 17160897
nsv8868 CNV loss 18304495

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927164 Gene

Disorders for LOC101927164 Gene

Additional Disease Information for LOC101927164

Open Targets Platform
Open Targets Platform

No disorders were found for LOC101927164 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927164 Gene

Publications for LOC101927164 Gene

No publications were found for LOC101927164 Gene.

No data available for Mastermind for LOC101927164 Gene

Products for LOC101927164 Gene

Sources for LOC101927164 Gene