Aliases for LOC101927151 Gene

Subcategory (RNA class) for LOC101927151 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LOC101927151 Gene

  • Uncharacterized LOC101927151 3
  • NONHSAG025378.2 91
  • HSALNG0125122 164
  • HSALNG0125116 164
  • Lnc-VSTM2B-9 165

External Ids for LOC101927151 Gene

Previous GeneCards Identifiers for LOC101927151 Gene

  • GC19U901749

Summaries for LOC101927151 Gene

GeneCards Summary for LOC101927151 Gene

LOC101927151 (Uncharacterized LOC101927151) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927151 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927151 Gene

Genomics for LOC101927151 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101927151 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927151 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927151 Gene

Genomic Locations for LOC101927151 Gene
chr19:27,793,431-28,024,969
(GRCh38/hg38)
Size:
231,539 bases
Orientation:
Plus strand

Genomic View for LOC101927151 Gene

Genes around LOC101927151 on UCSC Golden Path with GeneCards custom track
LOC101927151 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101927151 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927151 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927151 Gene

Proteins for LOC101927151 Gene

Post-translational modifications for LOC101927151 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927151 Gene

Domains & Families for LOC101927151 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927151 Gene

Function for LOC101927151 Gene

Phenotypes From GWAS Catalog for LOC101927151 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927151 Gene

Localization for LOC101927151 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927151 Gene

Pathways & Interactions for LOC101927151 Gene

PathCards logo

SuperPathways for LOC101927151 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927151 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927151 Gene

Drugs & Compounds for LOC101927151 Gene

No Compound Related Data Available

Transcripts for LOC101927151 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927151 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D1B8_9606 lncRNA 1829 3

RefSeq: NR_110687,

Ensembl: ENST00000669503 (view in UCSC) ,

LNCipedia: lnc-VSTM2B-9:38,

URS000075CB9D_9606 lncRNA 1406 2

RefSeq: NR_110690,

LNCipedia: lnc-VSTM2B-9:39,

URS0000BC44FA_9606 lncRNA 2655 1

RefSeq: NR_146734,

URS0000BC4504_9606 lncRNA 2610 1

RefSeq: NR_146733,

URS0000BC43BB_9606 lncRNA 1819 1

RefSeq: NR_110688,

LOC101927151 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101927151 Gene

7 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927151 Gene

No ASD Table

Relevant External Links for LOC101927151 Gene

GeneLoc Exon Structure for
LOC101927151

Expression for LOC101927151 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927151 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927151

genes like me logo Genes that share expression patterns with LOC101927151: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927151 Gene

Orthologs for LOC101927151 Gene

No data available for Orthologs and Evolution for LOC101927151 Gene

Paralogs for LOC101927151 Gene

No data available for Paralogs for LOC101927151 Gene

Variants for LOC101927151 Gene

Additional dbSNP identifiers (rs#s) for LOC101927151 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101927151 Gene

Variant ID Type Subtype PubMed ID
dgv1033e212 CNV loss 25503493
dgv3500n100 CNV gain 25217958
dgv3501n100 CNV gain 25217958
dgv3506n100 CNV loss 25217958
dgv658e214 CNV gain 21293372
esv2762966 CNV gain+loss 21179565
esv33362 CNV loss 17666407
esv3574397 CNV gain 25503493
esv3644065 CNV gain 21293372
esv3644083 CNV loss 21293372
esv3893194 CNV gain 25118596
nsv1058414 CNV gain 25217958
nsv1059005 CNV gain 25217958
nsv1066314 CNV loss 25217958
nsv579196 CNV gain 21841781
nsv978801 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927151 Gene

Disorders for LOC101927151 Gene

No disorders were found for LOC101927151 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927151 Gene

Publications for LOC101927151 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC101927151 Gene

Products for LOC101927151 Gene

Sources for LOC101927151 Gene