Aliases for LOC101927143 Gene

Data sources for LOC101927143 Gene:

Subcategory (RNA class) for LOC101927143 Gene

lncRNA

Aliases for LOC101927143 Gene

External Ids for LOC101927143 Gene

Previous GeneCards Identifiers for LOC101927143 Gene

  • GC01U903761
  • GC01M224400

Summaries for LOC101927143 Gene

GeneCards Summary for LOC101927143 Gene

LOC101927143 (Uncharacterized LOC101927143) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927143 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927143 Gene

Genomics for LOC101927143 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101927143 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J224212 Enhancer 0.9 ENCODE dbSUPER 296.8 +0.6 645 2.5 CEBPB EP300 ZEB2 RXRA RFX5 TEAD3 STAT3 SKIL JUND TBP LOC101927143 DEGS1 MK279996 NVL
GH01J224113 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 32.9 +99.1 99110 3.6 ZSCAN16 TBP ZBTB10 SP1 MXD4 SIX5 MNT IKZF1 SMAD5 ETS1 FBXO28 HSALNG0010934 NVL LOC101927143 CICP5 SEPTIN7P13 WDR26 MN298678-007 DEGS1
GH01J224181 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 24.5 +30.6 30577 4.1 ZSCAN16 CHD2 TBP ZBTB10 BCL11A FEZF1 CEBPA MNT IKZF1 SMAD5 DEGS1 LOC101927143 ENSG00000201898 HSALNG0010939 NVL
GH01J224106 Enhancer 1 Ensembl ENCODE 45.5 +107.3 107310 0.8 ZNF217 CTCF ELF1 CEBPB REST FOXA2 MAX SAP130 SMC3 RAD21 RN7SKP49 LOC101927143 LOC101927164 LOC105373056 lnc-NVL-3 FBXO28 HSALNG0010930 TP53BP2
GH01J224202 Enhancer 1.1 ENCODE dbSUPER 36.5 +9.3 9299 3.9 TBP SP1 BCL11A FEZF1 CEBPA IKZF1 ZNF217 ZIC2 CEBPB ZNF639 MK279996 MN308861 LOC101927143 FBXO28 SEPTIN7P13 CICP5 CNIH4 CAPN2 DEGS1 NVL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927143 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927143 Gene

Latest Assembly
chr1:224,206,910-224,214,111
(GRCh38/hg38)
Size:
7,202 bases
Orientation:
Minus strand

Previous Assembly
chr1:224,396,449-224,400,981
(GRCh37/hg19 by Entrez Gene)
Size:
4,533 bases
Orientation:
Minus strand

chr1:224,396,449-224,400,981
(GRCh37/hg19 by Ensembl)
Size:
4,533 bases
Orientation:
Minus strand

Genomic View for LOC101927143 Gene

Genes around LOC101927143 on UCSC Golden Path with GeneCards custom track
LOC101927143 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101927143 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927143 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927143 Gene

Proteins for LOC101927143 Gene

Post-translational modifications for LOC101927143 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927143 Gene

Domains & Families for LOC101927143 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927143 Gene

Function for LOC101927143 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927143 Gene

Localization for LOC101927143 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927143 Gene

Pathways & Interactions for LOC101927143 Gene

PathCards logo

SuperPathways for LOC101927143 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927143 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927143 Gene

Drugs & Compounds for LOC101927143 Gene

No Compound Related Data Available

Transcripts for LOC101927143 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927143 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003C1443_9606 lncRNA 437 3

Ensembl: ENST00000453760 (view in UCSC) ,

LNCipedia: lnc-NVL-1:2,

NONCODE: NONHSAT009783.2,

URS00004E86ED_9606 lncRNA 790 2

Ensembl: ENST00000436706 (view in UCSC) ,

LNCipedia: lnc-NVL-1:1,

URS0000EF2BC5_9606 lncRNA 1142 1

Ensembl: ENST00000664126 (view in UCSC) ,

URS000075B1C1_9606 lncRNA 789 1

RefSeq: NR_110669,

URS0001BF797D_9606 lncRNA 5572 1

LncBook: HSALNT0022816,

LOC101927143 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101927143 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927143 Gene

No ASD Table

Relevant External Links for LOC101927143 Gene

GeneLoc Exon Structure for
LOC101927143

Expression for LOC101927143 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927143 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927143 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x6.8) and Skin - Not Sun Exposed (Suprapubic) (x4.8).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927143

genes like me logo Genes that share expression patterns with LOC101927143: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927143 Gene

Orthologs for LOC101927143 Gene

Evolution for LOC101927143 Gene

ENSEMBL:
Gene Tree for LOC101927143 (if available)
TreeFam:
Gene Tree for LOC101927143 (if available)

No data available for Orthologs for LOC101927143 Gene

Paralogs for LOC101927143 Gene

No data available for Paralogs for LOC101927143 Gene

Variants for LOC101927143 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101927143 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101927143 Gene

Variant ID Type Subtype PubMed ID
nsv832692 CNV gain 17160897
nsv8868 CNV loss 18304495

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927143 Gene

Disorders for LOC101927143 Gene

No disorders were found for LOC101927143 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927143 Gene

Publications for LOC101927143 Gene

No publications were found for LOC101927143 Gene.

No data available for Mastermind for LOC101927143 Gene

Products for LOC101927143 Gene

Sources for LOC101927143 Gene