Aliases for LOC101927136 Gene

Subcategory (RNA class) for LOC101927136 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC101927136 Gene

  • Uncharacterized LOC101927136 3
  • NONHSAG043962.2 91
  • HSALNG0050687 164
  • Lnc-GCLC-1 165

External Ids for LOC101927136 Gene

Previous GeneCards Identifiers for LOC101927136 Gene

  • GC06U902446

Summaries for LOC101927136 Gene

GeneCards Summary for LOC101927136 Gene

LOC101927136 (Uncharacterized LOC101927136) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927136 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927136 Gene

Genomics for LOC101927136 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101927136 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J053614 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 600.7 +1.3 1329 3.5 GATAD2A ATF7 REST TFE3 LEF1 SOX13 NFKBIZ RCOR2 ZNF7 JUND LINC01564 ENSG00000231683 GCLC LOC101927136 piR-31938-010 ELOVL5
GH06J053592 Promoter/Enhancer 1.1 Ensembl ENCODE 0.4 +24.1 24068 0.6 LEF1 JUND PKNOX1 MTA1 HDAC1 SOX6 EP300 HMBOX1 CTBP1 NFE2 LINC01564 LOC101927136 piR-31938-010 GCLC ENSG00000231683 ELOVL5
GH06J053606 Enhancer 0.7 Ensembl ENCODE 0.4 +11.6 11568 1.2 TEAD4 ZNF24 YY1 AFF1 TRIM28 MAFK GATA2 LINC01564 LOC101927136 GCLC ENSG00000231683 piR-31938-010 ELOVL5
GH06J053610 Enhancer 0.6 ENCODE dbSUPER 0.4 +5.5 5454 1.9 ZIC2 ZNF585B PRDM6 LINC01564 ENSG00000231683 GCLC LOC101927136 piR-31938-010 ELOVL5
GH06J053603 Enhancer 0.6 Ensembl 0.4 +13.5 13468 0.6 PRDM1 ZIC2 ZSCAN5C HNF4A FEZF1 PRDM6 ZNF384 ZNF488 ZNF121 SP1 LINC01564 LOC101927136 GCLC ENSG00000231683 piR-31938-010 ELOVL5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927136 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101927136 Gene

Genomic Locations for LOC101927136 Gene
chr6:53,561,289-53,617,169
(GRCh38/hg38)
Size:
55,881 bases
Orientation:
Minus strand

Genomic View for LOC101927136 Gene

Genes around LOC101927136 on UCSC Golden Path with GeneCards custom track
LOC101927136 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101927136 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927136 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927136 Gene

Proteins for LOC101927136 Gene

Post-translational modifications for LOC101927136 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927136 Gene

Domains & Families for LOC101927136 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927136 Gene

Function for LOC101927136 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927136 Gene

Localization for LOC101927136 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927136 Gene

Pathways & Interactions for LOC101927136 Gene

PathCards logo

SuperPathways for LOC101927136 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927136 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927136 Gene

Drugs & Compounds for LOC101927136 Gene

No Compound Related Data Available

Transcripts for LOC101927136 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101927136 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E370_9606 lncRNA 3531 2

RefSeq: NR_110840,

LNCipedia: lnc-GCLC-1:11,

URS00008B5061_9606 lncRNA 3739 3

LncBook: HSALNT0107343,

LNCipedia: lnc-GCLC-1:4,

NONCODE: NONHSAT113181.2,

URS00008B4127_9606 lncRNA 3682 3

LncBook: HSALNT0107345,

LNCipedia: lnc-GCLC-1:3,

NONCODE: NONHSAT113183.2,

URS00008BD0BF_9606 lncRNA 2155 3

LncBook: HSALNT0107347,

LNCipedia: lnc-GCLC-1:13,

NONCODE: NONHSAT113184.2,

URS00008B7D95_9606 lncRNA 542 3

LncBook: HSALNT0107351,

LNCipedia: lnc-GCLC-1:8,

NONCODE: NONHSAT113188.2,

LOC101927136 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101927136 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927136 Gene

No ASD Table

Relevant External Links for LOC101927136 Gene

GeneLoc Exon Structure for
LOC101927136

Expression for LOC101927136 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927136 Gene

genes like me logo Genes that share expression patterns with LOC101927136: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927136 Gene

Orthologs for LOC101927136 Gene

No data available for Orthologs and Evolution for LOC101927136 Gene

Paralogs for LOC101927136 Gene

No data available for Paralogs for LOC101927136 Gene

Variants for LOC101927136 Gene

Additional dbSNP identifiers (rs#s) for LOC101927136 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101927136 Gene

Variant ID Type Subtype PubMed ID
esv2763940 CNV gain+loss 21179565

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927136 Gene

Disorders for LOC101927136 Gene

No disorders were found for LOC101927136 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927136 Gene

Publications for LOC101927136 Gene

  1. Differential Expression of Long Noncoding RNAs in Human Cumulus Cells Related to Embryo Developmental Potential: A Microarray Analysis. (PMID: 25527423) Xu XF … Chen BL (Reproductive sciences (Thousand Oaks, Calif.) 2015) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101927136 Gene

Products for LOC101927136 Gene

Sources for LOC101927136 Gene