Aliases for LOC101927131 Gene

Subcategory (RNA class) for LOC101927131 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC101927131 Gene

  • Uncharacterized LOC101927131 3
  • Novel Transcript, Antisense To A Novel Protein Gene 5
  • NONHSAG018608 94
  • HSALNG0109600 169
  • AC099489.3 5

External Ids for LOC101927131 Gene

Previous GeneCards Identifiers for LOC101927131 Gene

  • GC16U901651
  • GC16P011567

Summaries for LOC101927131 Gene

GeneCards Summary for LOC101927131 Gene

LOC101927131 (Uncharacterized LOC101927131) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927131 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927131 Gene

Genomics for LOC101927131 Gene

GeneHancer (GH) Regulatory Elements for LOC101927131 Gene

Promoters and enhancers for LOC101927131 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J011474 Enhancer 0.8 Ensembl ENCODE 9.9 +10.0 10003 0.7 USF2 HLF TFE3 ZNF24 CEBPA GATAD2A RAD51 USF1 FOXA2 FOXP1 LOC101927131 lnc-RMI2-5 RF01210-134 LOC400499
GH16J011484 Enhancer 0.7 Ensembl 7.6 +19.6 19640 1.8 RBPJ NR2F6 SOX6 ELF3 KAT8 NFKBIZ KMT2B RCOR2 IRF2 ZNF205 LOC101927131 lnc-RMI2-5 hsa-miR-5095-182 LOC400499
GH16J011482 Enhancer 0.3 ENCODE 10.1 +16.9 16920 0.2 FOS LOC101927131 lnc-RMI2-5 hsa-miR-5095-182 LOC400499
GH16J011475 Enhancer 0.2 Ensembl 9.9 +8.8 8841 0.2 LOC101927131 lnc-RMI2-5 RF01210-134 LOC400499
GH16J011476 Enhancer 0.4 Ensembl 0.4 +9.4 9441 0.2 GATAD2A ATF7 SOX5 lnc-RMI2-5 LOC101927131 RF01210-134 LOC400499
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927131 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927131 Gene

Genomic Locations for LOC101927131 Gene
chr16:11,465,260-11,491,157
(GRCh38/hg38)
Size:
25,898 bases
Orientation:
Plus strand
chr16:11,559,116-11,567,030
(GRCh37/hg19)
Size:
7,915 bases
Orientation:
Plus strand

Genomic View for LOC101927131 Gene

Genes around LOC101927131 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927131 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927131 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927131 Gene

Proteins for LOC101927131 Gene

Post-translational modifications for LOC101927131 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927131 Gene

Domains & Families for LOC101927131 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927131 Gene

Function for LOC101927131 Gene

Phenotypes From GWAS Catalog for LOC101927131 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927131 Gene

Localization for LOC101927131 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927131 Gene

Pathways & Interactions for LOC101927131 Gene

PathCards logo

SuperPathways for LOC101927131 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101927131 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927131 Gene

Drugs & Compounds for LOC101927131 Gene

No Compound Related Data Available

Transcripts for LOC101927131 Gene

mRNA/cDNA for LOC101927131 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(1) LncBook transcripts :
(3) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927131 Gene

No ASD Table

Relevant External Links for LOC101927131 Gene

GeneLoc Exon Structure for
LOC101927131

Expression for LOC101927131 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927131 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927131 Gene

This gene is overexpressed in Testis (x19.6) and Whole Blood (x18.1).
genes like me logo Genes that share expression patterns with LOC101927131: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927131 Gene

Orthologs for LOC101927131 Gene

Evolution for LOC101927131 Gene

ENSEMBL:
Gene Tree for LOC101927131 (if available)
TreeFam:
Gene Tree for LOC101927131 (if available)

No data available for Orthologs for LOC101927131 Gene

Paralogs for LOC101927131 Gene

No data available for Paralogs for LOC101927131 Gene

Variants for LOC101927131 Gene

Sequence variations from dbSNP and Humsavar for LOC101927131 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000492073 -- 11,471,413(+) G/T non_coding_transcript_variant
rs1000664398 -- 11,468,037(+) A/G intron_variant
rs1001119068 -- 11,467,768(+) G/C intron_variant
rs1001122880 -- 11,470,033(+) G/A intron_variant
rs1001299223 -- 11,469,207(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101927131 Gene

Variant ID Type Subtype PubMed ID
esv2659314 CNV deletion 23128226
esv3637927 CNV loss 21293372
nsv1045983 CNV loss 25217958
nsv457409 CNV gain 19166990
nsv520088 CNV loss 19592680
nsv571456 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101927131 Gene

Disorders for LOC101927131 Gene

No disorders were found for LOC101927131 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927131 Gene

Publications for LOC101927131 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LOC101927131 Gene

Products for LOC101927131 Gene

Sources for LOC101927131 Gene