Aliases for LOC101927069 Gene

Subcategory (RNA class) for LOC101927069 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC101927069 Gene

  • Uncharacterized LOC101927069 3
  • NONHSAG052505 92
  • HSALNG0071712 167
  • Lnc-PRKACG-1 168

External Ids for LOC101927069 Gene

Previous GeneCards Identifiers for LOC101927069 Gene

  • GC09U901892

Summaries for LOC101927069 Gene

GeneCards Summary for LOC101927069 Gene

LOC101927069 (Uncharacterized LOC101927069) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927069 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927069 Gene

Genomics for LOC101927069 Gene

GeneHancer (GH) Regulatory Elements for LOC101927069 Gene

Promoters and enhancers for LOC101927069 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J068973 Enhancer 0.8 ENCODE 500.7 +0.5 503 2.2 RCOR1 CTBP1 TRIM22 ATF2 BCL11A TCF12 ZNF316 POLR2A SRF ARNT LOC101927069 PRKACG FAM122A PIP5K1B lnc-PRKACG-5
GH09J068981 Enhancer 1 ENCODE CraniofacialAtlas 0.4 -6.9 -6895 2.6 ZSCAN5C EP300 TRIM28 MEF2C OSR2 BCL11A NCOR1 CEBPB NFIC ZBTB17 PRKACG PIP5K1B TJP2 piR-41405-138 LOC101927069
GH09J068952 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +24.4 24378 4.6 SP1 CTCF RAD21 CTBP1 TRIM22 BCL11A TCF12 SRF SPI1 BATF PIP5K1B PRKACG FAM122A TJP2 lnc-PRKACG-5 LOC101927069
GH09J068969 Enhancer 0.9 ENCODE 0.4 +5.9 5901 1.2 FOXK2 ZSCAN5C NCOR1 KDM6A TCF7 FOXA1 ZBTB25 TEAD1 ZKSCAN8 ZSCAN9 PIP5K1B RNU6-820P PRKACG LOC101927069 lnc-PRKACG-5
GH09J068978 Enhancer 0.5 ENCODE 0.7 -2.4 -2361 0.2 SPI1 ELF1 IKZF1 TBX21 MTA2 IKZF2 HMBOX1 DPF2 PRKACG LOC101927069 piR-41405-138 PIP5K1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927069 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927069 Gene

Genomic Locations for LOC101927069 Gene
chr9:68,953,088-68,975,879
(GRCh38/hg38)
Size:
22,792 bases
Orientation:
Minus strand

Genomic View for LOC101927069 Gene

Genes around LOC101927069 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927069 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927069 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927069 Gene

Proteins for LOC101927069 Gene

Post-translational modifications for LOC101927069 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927069 Gene

Domains & Families for LOC101927069 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927069 Gene

Function for LOC101927069 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927069 Gene

Localization for LOC101927069 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927069 Gene

Pathways & Interactions for LOC101927069 Gene

PathCards logo

SuperPathways for LOC101927069 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101927069 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927069 Gene

Drugs & Compounds for LOC101927069 Gene

No Compound Related Data Available

Transcripts for LOC101927069 Gene

mRNA/cDNA for LOC101927069 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
4 NONCODE transcripts :
4 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927069 Gene

No ASD Table

Relevant External Links for LOC101927069 Gene

GeneLoc Exon Structure for
LOC101927069

Expression for LOC101927069 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927069

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927069 Gene

Orthologs for LOC101927069 Gene

No data available for Orthologs and Evolution for LOC101927069 Gene

Paralogs for LOC101927069 Gene

No data available for Paralogs for LOC101927069 Gene

Variants for LOC101927069 Gene

Additional dbSNP identifiers (rs#s) for LOC101927069 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101927069 Gene

Variant ID Type Subtype PubMed ID
dgv7665n100 CNV gain 25217958
dgv7666n100 CNV gain 25217958
esv2422258 CNV duplication 17116639
esv3576657 CNV gain 25503493
esv3620550 CNV loss 21293372
esv3891678 CNV gain 25118596
esv3891679 CNV gain 25118596
nsv466393 CNV gain 19166990
nsv466397 CNV gain 19166990
nsv614547 CNV gain 21841781
nsv614548 CNV gain 21841781
nsv614549 CNV gain 21841781
nsv614550 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927069 Gene

Disorders for LOC101927069 Gene

No disorders were found for LOC101927069 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927069 Gene

Publications for LOC101927069 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LOC101927069 Gene

Products for LOC101927069 Gene

Sources for LOC101927069 Gene