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LOC101927044 Gene(RNA Gene)

Uncharacterized LOC101927044

GCID:
GC18P003194
GIFtS:
9
Genes Participants
UDN Logo

Aliases for LOC101927044 Gene

Subcategory (RNA class) for LOC101927044 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101927044 Gene

  • Uncharacterized LOC101927044 3

External Ids for LOC101927044 Gene

Previous GeneCards Identifiers for LOC101927044 Gene

  • GC18U900783

Summaries for LOC101927044 Gene

GeneCards Summary for LOC101927044 Gene

LOC101927044 (Uncharacterized LOC101927044) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101927044 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC101927044 Gene

Genomics for LOC101927044 Gene

GeneHancer (GH) Regulatory Elements for LOC101927044 Gene

Promoters and enhancers for LOC101927044 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J003245 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 +59.2 59177 22.1 LCORL ZBTB33 DACH1 SPI1 RAD21 NR2F6 SP1 MNT SMARCE1 ZFX MYOM1 MYL12A MYL12B METTL4 LOC104968399 ENSG00000265399 CBX3P2 LPIN2 EMILIN2 SMCHD1
GH18J003216 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 0.3 +21.7 21675 4.4 FOXA1 NR2F6 SP1 MNT L3MBTL2 CEBPG RXRA ZNF548 ATF1 CTBP1 MYOM1 METTL4 LOC101927044 ENSG00000265399
GH18J003211 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.3 +16.4 16447 4 SMARCA4 POLR2A ZNF639 ATF1 PKNOX1 LEF1 SOX13 ZNF316 RFX1 EP300 METTL4 MYOM1 LOC101927044 ENSG00000265399
GH18J003233 Enhancer 1 ENCODE dbSUPER 0.3 +36.7 36717 0.5 LCORL FOXA1 NR2F6 SP1 ZNF24 RAD21 RXRA FOXA2 ATF7 SOX13 ENSG00000252258 LPIN2 PIR46001 MYOM1 LOC101927044 ENSG00000265399
GH18J003209 Enhancer 0.7 ENCODE 0.4 +13.1 13064 0.2 ZNF24 MAFK IKZF1 IKZF2 ZNF316 DPF2 JUND RUNX3 BCL11A FOXA2 LOC101927044 MYOM1 ENSG00000265399
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927044 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927044 Gene

Genomic Locations for LOC101927044 Gene
chr18:3,196,904-3,247,341
(GRCh38/hg38)
Size:
50,438 bases
Orientation:
Plus strand
chr18:3,190,395-3,247,275
(GRCh37/hg19)
Size:
56,881 bases
Orientation:
Plus strand

Genomic View for LOC101927044 Gene

Genes around LOC101927044 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927044 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927044 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101927044 Gene

Proteins for LOC101927044 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC101927044 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927044 Gene

Domains & Families for LOC101927044 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC101927044 Gene

Function for LOC101927044 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC101927044 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927044 Gene

Localization for LOC101927044 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927044 Gene

Pathways & Interactions for LOC101927044 Gene

GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards

SuperPathways for LOC101927044 Gene

PathCards logo More details on SuperPathways for LOC101927044
No Data Available

Interacting Proteins for LOC101927044 Gene

Gene Ontology (GO) - Biological Process for LOC101927044 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101927044 Gene

Drugs & Compounds for LOC101927044 Gene

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  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for LOC101927044 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC101927044 Gene

(1) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927044 Gene

No ASD Table

Relevant External Links for LOC101927044 Gene

GeneLoc Exon Structure for
LOC101927044

Expression for LOC101927044 Gene

Products:

  1. Primer
  2. Gene Expression Assay
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101927044 Gene

mRNA expression in normal human tissues for LOC101927044 Gene
mRNA expression by GTEx for LOC101927044 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101927044 Gene

This gene is overexpressed in Liver (x4.2).
genes like me logo Genes that share expression patterns with LOC101927044: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927044 Gene

Orthologs for LOC101927044 Gene

No data available for Orthologs and Evolution for LOC101927044 Gene

Paralogs for LOC101927044 Gene

No data available for Paralogs for LOC101927044 Gene

Variants for LOC101927044 Gene

Products:

  1. SNP Genotyping and Copy Number Assay
Varelect - NGS phenotyyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for LOC101927044 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs113162857 uncertain-significance, not specified, Hypertrophic cardiomyopathy 3,215,159(+) A/C/G/T upstream_transcript_variant
rs1234403854 uncertain-significance, Hypertrophic cardiomyopathy 3,215,082(+) T/A upstream_transcript_variant
rs150321474 benign, Hypertrophic cardiomyopathy 3,215,179(+) G/A upstream_transcript_variant
rs1662316 benign, not specified, Cardiovascular phenotype 3,215,158(+) C/A/G/T upstream_transcript_variant
rs1791085 benign, not specified, Cardiovascular phenotype 3,215,160(+) C/A/G/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101927044 Gene

Disorders for LOC101927044 Gene

Additional Disease Information for LOC101927044

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LOC101927044 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101927044 Gene

Publications for LOC101927044 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC101927044 Gene

Sources for LOC101927044 Gene

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