Aliases for LOC101927021 Gene

Subcategory (RNA class) for LOC101927021 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC101927021 Gene

  • Uncharacterized LOC101927021 3
  • NONHSAG046760 92
  • HSALNG0055619 167
  • Lnc-UNCX-3 168

External Ids for LOC101927021 Gene

Previous GeneCards Identifiers for LOC101927021 Gene

  • GC07U903519

Summaries for LOC101927021 Gene

GeneCards Summary for LOC101927021 Gene

LOC101927021 (Uncharacterized LOC101927021) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101927021 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101927021 Gene

Genomics for LOC101927021 Gene

GeneHancer (GH) Regulatory Elements for LOC101927021 Gene

Promoters and enhancers for LOC101927021 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J001157 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -0.5 -501 3.9 ZBTB40 ZNF217 SIN3A NRF1 POLR2G SP1 PHF8 ZFX REST POLR2A ENSG00000229043 ZFAND2A LOC101927021 lnc-C7orf50-1 piR-60246-149 ENSG00000224079 TFAMP1 piR-50308-566 lnc-ZFAND2A-4
GH07J001156 Enhancer 1.1 ENCODE dbSUPER 0.7 -3.3 -3283 1.3 EP300 FOXK2 ZNF217 TCF12 POLR2G NCOR1 FOS KDM6A TCF7 FOXA1 ENSG00000229043 ENSG00000224079 LOC101927021 ZFAND2A lnc-C7orf50-1 piR-50308-566
GH07J001155 Enhancer 0.3 Ensembl 0.7 -4.9 -4873 0.2 AGO1 ENSG00000224079 ENSG00000229043 LOC101927021 ZFAND2A lnc-C7orf50-1 piR-50308-566
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101927021 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101927021 Gene

Genomic Locations for LOC101927021 Gene
chr7:1,160,374-1,165,958
(GRCh38/hg38)
Size:
5,585 bases
Orientation:
Plus strand

Genomic View for LOC101927021 Gene

Genes around LOC101927021 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101927021 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101927021 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101927021 Gene

Proteins for LOC101927021 Gene

Post-translational modifications for LOC101927021 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101927021 Gene

Domains & Families for LOC101927021 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101927021 Gene

Function for LOC101927021 Gene

Phenotypes From GWAS Catalog for LOC101927021 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101927021 Gene

Localization for LOC101927021 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101927021 Gene

Pathways & Interactions for LOC101927021 Gene

PathCards logo

SuperPathways for LOC101927021 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC101927021 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101927021 Gene

Drugs & Compounds for LOC101927021 Gene

No Compound Related Data Available

Transcripts for LOC101927021 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101927021 Gene

No ASD Table

Relevant External Links for LOC101927021 Gene

GeneLoc Exon Structure for
LOC101927021

Expression for LOC101927021 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101927021 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101927021

genes like me logo Genes that share expression patterns with LOC101927021: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101927021 Gene

Orthologs for LOC101927021 Gene

No data available for Orthologs and Evolution for LOC101927021 Gene

Paralogs for LOC101927021 Gene

No data available for Paralogs for LOC101927021 Gene

Variants for LOC101927021 Gene

Additional dbSNP identifiers (rs#s) for LOC101927021 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101927021 Gene

Variant ID Type Subtype PubMed ID
dgv11119n54 CNV loss 21841781
esv2759499 CNV loss 17122850
nsv1028941 CNV gain 25217958
nsv1032992 CNV gain 25217958
nsv471182 CNV loss 18288195
nsv508441 CNV deletion 20534489
nsv605705 CNV loss 21841781
nsv605735 CNV gain 21841781
nsv830876 CNV loss 17160897
nsv830877 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101927021 Gene

Disorders for LOC101927021 Gene

No disorders were found for LOC101927021 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101927021 Gene

Publications for LOC101927021 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 54
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

No data available for Mastermind for LOC101927021 Gene

Products for LOC101927021 Gene

Sources for LOC101927021 Gene