Aliases for LOC101926964 Gene

Data sources for LOC101926964 Gene:

Subcategory (RNA class) for LOC101926964 Gene

lncRNA

Aliases for LOC101926964 Gene

External Ids for LOC101926964 Gene

Previous GeneCards Identifiers for LOC101926964 Gene

  • GC01U903962

Summaries for LOC101926964 Gene

GeneCards Summary for LOC101926964 Gene

LOC101926964 (Uncharacterized LOC101926964) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101926964 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101926964 Gene

Genomics for LOC101926964 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101926964 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J060867 Promoter/Enhancer 2.1 UCNEbase EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +1.1 1080 4.4 FEZF1 ZEB1 ZNF639 RXRA ZNF843 PRDM6 JUND INSM2 ZNF24 HNF4A LOC101926964 NFIA NFIA-AS2 TM2D1
GH01J060872 Enhancer 0.5 Ensembl CraniofacialAtlas dbSUPER 0.7 -4.8 -4756 0.9 NFIA-AS2 LOC101926964 NFIA lnc-PATJ-10 TM2D1
GH01J060848 Enhancer 0.8 Ensembl ENCODE 0.4 +19.6 19630 1.6 CTCF CEBPB REST FOXA2 SMC3 RAD21 JUND IRF9 ZC3H8 ZNF384 NFIA-AS2 piR-34822-011 NFIA LOC101926964 piR-60985-004 C1orf87
GH01J060858 Enhancer 0.6 ENCODE dbSUPER 0.4 +9.5 9485 0.2 CTCF MCM3 RCOR1 ZNF398 ZSCAN4 CHD2 piR-34822-011 LOC101926964 NFIA piR-60985-004 C1orf87
GH01J060874 Enhancer 0.6 ENCODE 0.4 -7.1 -7123 1.2 VEZF1 FOSL1 JUND EGR1 ZNF148 ARID1B DPF2 SMARCE1 ATF3 EGR2 NFIA-AS2 LOC101926964 NFIA lnc-PATJ-10 TM2D1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101926964 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101926964 Gene

Latest Assembly
chr1:60,649,142-60,868,009
(GRCh38/hg38)
Size:
218,868 bases
Orientation:
Minus strand

Previous Assembly
chr1:61,125,303-61,291,256
(GRCh37/hg19 by Entrez Gene)
Size:
165,954 bases
Orientation:
Minus strand

chr1:61,125,303-61,291,256
(GRCh37/hg19 by Ensembl)
Size:
165,954 bases
Orientation:
Minus strand

Genomic View for LOC101926964 Gene

Genes around LOC101926964 on UCSC Golden Path with GeneCards custom track
LOC101926964 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101926964 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101926964 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101926964 Gene

Proteins for LOC101926964 Gene

Post-translational modifications for LOC101926964 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101926964 Gene

Domains & Families for LOC101926964 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101926964 Gene

Function for LOC101926964 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101926964 Gene

Localization for LOC101926964 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101926964 Gene

Pathways & Interactions for LOC101926964 Gene

PathCards logo

SuperPathways for LOC101926964 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101926964 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101926964 Gene

Drugs & Compounds for LOC101926964 Gene

No Compound Related Data Available

Transcripts for LOC101926964 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101926964 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005679D1_9606 lncRNA 2350 5

RefSeq: NR_110628,

Ensembl: ENST00000423403 (view in UCSC) ,

LncBook: HSALNT0007864,

LNCipedia: LINC01748:25,

NONCODE: NONHSAT003592.2,

URS00009C6018_9606 lncRNA 2193 3

Ensembl: ENST00000634701 (view in UCSC) ,

LncBook: HSALNT0007867,

LNCipedia: LINC01748:24,

URS00009C6142_9606 lncRNA 2021 3

Ensembl: ENST00000635290 (view in UCSC) ,

LncBook: HSALNT0007866,

LNCipedia: LINC01748:18,

URS0000EF220F_9606 lncRNA 2137 1

Ensembl: ENST00000665662 (view in UCSC) ,

URS0000EF6A5F_9606 lncRNA 1653 1

Ensembl: ENST00000663928 (view in UCSC) ,

LOC101926964 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101926964 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101926964 Gene

No ASD Table

Relevant External Links for LOC101926964 Gene

GeneLoc Exon Structure for
LOC101926964

Expression for LOC101926964 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101926964 Gene

genes like me logo Genes that share expression patterns with LOC101926964: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101926964 Gene

Orthologs for LOC101926964 Gene

Evolution for LOC101926964 Gene

ENSEMBL:
Gene Tree for LOC101926964 (if available)
TreeFam:
Gene Tree for LOC101926964 (if available)

No data available for Orthologs for LOC101926964 Gene

Paralogs for LOC101926964 Gene

No data available for Paralogs for LOC101926964 Gene

Variants for LOC101926964 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101926964 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101926964 Gene

Variant ID Type Subtype PubMed ID
dgv99e59 CNV tandem duplication 20981092
esv2113114 CNV deletion 18987734
esv2748930 CNV deletion 23290073
esv2862791 CNV duplication 24192839
esv3307414 CNV mobile element insertion 20981092
esv3422937 CNV duplication 20981092
esv3439984 CNV insertion 20981092
esv3447080 CNV insertion 20981092
nsv1012657 CNV gain 25217958
nsv1133857 CNV deletion 24896259
nsv1160856 CNV duplication 26073780

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101926964 Gene

Disorders for LOC101926964 Gene

Additional Disease Information for LOC101926964

Open Targets Platform
Open Targets Platform

No disorders were found for LOC101926964 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC101926964 Gene

Publications for LOC101926964 Gene

  1. Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. (PMID: 21829377) Lemaitre RN … Steffen LM (PLoS genetics 2011) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC101926964 Gene

Products for LOC101926964 Gene

Sources for LOC101926964 Gene