Aliases for LOC101926960 Gene

Data sources for LOC101926960 Gene:

RNA type for LOC101926960 Gene

lncRNA

Aliases for LOC101926960 Gene

External Ids for LOC101926960 Gene

Previous GeneCards Identifiers for LOC101926960 Gene

  • GC05U901881

Summaries for LOC101926960 Gene

GeneCards Summary for LOC101926960 Gene

LOC101926960 (Uncharacterized LOC101926960) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101926960 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101926960 Gene

Genomics for LOC101926960 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101926960 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J042168 Enhancer 0.2 Ensembl 0.4 +19.8 19792 0.4 CCDC152 RF01061-136 LOC101926960 lnc-FBXO4-1 FBXO4 GHR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101926960 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101926960 Gene

Latest Assembly
chr5:42,152,940-42,188,192
(GRCh38/hg38)
Size:
35,253 bases
Orientation:
Minus strand

Previous Assembly
chr5:42,155,935-42,175,447
(GRCh37/hg19 by Entrez Gene)
Size:
19,513 bases
Orientation:
Minus strand

Genomic View for LOC101926960 Gene

Genes around LOC101926960 on UCSC Golden Path with GeneCards custom track
LOC101926960 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101926960 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101926960 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101926960 Gene

Proteins for LOC101926960 Gene

Post-translational modifications for LOC101926960 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101926960 Gene

Domains & Families for LOC101926960 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101926960 Gene

Function for LOC101926960 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101926960 Gene

Localization for LOC101926960 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101926960 Gene

Pathways & Interactions for LOC101926960 Gene

PathCards logo

SuperPathways for LOC101926960 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101926960 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101926960 Gene

Drugs & Compounds for LOC101926960 Gene

No Compound Related Data Available

Transcripts for LOC101926960 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101926960 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075C967_9606 lncRNA 2011 3

RefSeq: NR_104635,

LncBook: HSALNT0087115,

LNCipedia: lnc-OXCT1-1:13,

URS000075DCDC_9606 lncRNA 1909 3

RefSeq: NR_104636,

LncBook: HSALNT0087116,

LNCipedia: lnc-OXCT1-1:12,

URS00008B5E39_9606 lncRNA 1662 3

LncBook: HSALNT0087108,

LNCipedia: lnc-OXCT1-1:1,

NONCODE: NONHSAT101191.2,

URS00008BA8F8_9606 lncRNA 1634 3

LncBook: HSALNT0087111,

LNCipedia: lnc-OXCT1-1:4,

NONCODE: NONHSAT101194.2,

URS00009C45A5_9606 lncRNA 1508 3

LncBook: HSALNT0087110,

LNCipedia: lnc-OXCT1-1:5,

NONCODE: NONHSAT101193.2,

LOC101926960 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101926960 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101926960 Gene

No ASD Table

Relevant External Links for LOC101926960 Gene

GeneLoc Exon Structure for
LOC101926960

Expression for LOC101926960 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101926960

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101926960 Gene

Orthologs for LOC101926960 Gene

No data available for Orthologs and Evolution for LOC101926960 Gene

Paralogs for LOC101926960 Gene

No data available for Paralogs for LOC101926960 Gene

Variants for LOC101926960 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101926960 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101926960 Gene

Variant ID Type Subtype PubMed ID
esv2114337 CNV deletion 18987734
esv2621343 CNV deletion 19546169
esv2665823 CNV deletion 23128226
esv2730132 CNV deletion 23290073
esv3274 CNV loss 18987735
esv3293940 CNV deletion 24192839
esv3565860 CNV deletion 23714750
esv3604865 CNV gain 21293372
esv7370 CNV loss 19470904
nsv1034208 CNV gain 25217958
nsv1140537 CNV deletion 24896259
nsv462125 CNV loss 19166990
nsv473815 CNV novel sequence insertion 20440878
nsv4813 CNV deletion 18451855
nsv513231 CNV loss 21212237
nsv597885 CNV loss 21841781

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101926960 Gene

Disorders for LOC101926960 Gene

No disorders were found for LOC101926960 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101926960 Gene

Publications for LOC101926960 Gene

No publications were found for LOC101926960 Gene.

No data available for Mastermind for LOC101926960 Gene

Products for LOC101926960 Gene

Sources for LOC101926960 Gene