Aliases for LOC101593348 Gene

Data sources for LOC101593348 Gene:

Subcategory (RNA class) for LOC101593348 Gene

lncRNA

Aliases for LOC101593348 Gene

External Ids for LOC101593348 Gene

Previous GeneCards Identifiers for LOC101593348 Gene

  • GC12U901779

Summaries for LOC101593348 Gene

GeneCards Summary for LOC101593348 Gene

LOC101593348 (Uncharacterized LOC101593348) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101593348 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101593348 Gene

Genomics for LOC101593348 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101593348 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J122222 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.6 -586 6.3 TBP SP1 MXD4 NR2C1 MNT SMAD5 ETS1 MBD2 ZNF217 POLR2A DIABLO ENSG00000284934 LOC101593348 lnc-DIABLO-1 LINC01089 SETD1B ENSG00000256861 VPS33A KDM2B RSRC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101593348 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101593348 Gene

Latest Assembly
chr12:122,226,442-122,228,792
(GRCh38/hg38)
Size:
2,351 bases
Orientation:
Plus strand

Previous Assembly
chr12:122,710,989-122,713,339
(GRCh37/hg19 by Entrez Gene)
Size:
2,351 bases
Orientation:
Plus strand

Genomic View for LOC101593348 Gene

Genes around LOC101593348 on UCSC Golden Path with GeneCards custom track
LOC101593348 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101593348 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101593348 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101593348 Gene

Proteins for LOC101593348 Gene

Post-translational modifications for LOC101593348 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101593348 Gene

Domains & Families for LOC101593348 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101593348 Gene

Function for LOC101593348 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101593348 Gene

Localization for LOC101593348 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101593348 Gene

Pathways & Interactions for LOC101593348 Gene

PathCards logo

SuperPathways for LOC101593348 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101593348 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101593348 Gene

Drugs & Compounds for LOC101593348 Gene

No Compound Related Data Available

Transcripts for LOC101593348 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101593348 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DF07_9606 lncRNA 2351 3

RefSeq: NR_103497,

LncBook: HSALNT0196203,

NONCODE: NONHSAT031500.2,

LOC101593348 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101593348 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101593348 Gene

No ASD Table

Relevant External Links for LOC101593348 Gene

GeneLoc Exon Structure for
LOC101593348

Expression for LOC101593348 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101593348

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101593348 Gene

Orthologs for LOC101593348 Gene

No data available for Orthologs and Evolution for LOC101593348 Gene

Paralogs for LOC101593348 Gene

No data available for Paralogs for LOC101593348 Gene

Variants for LOC101593348 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101593348 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC101593348 Gene

Variant ID Type Subtype PubMed ID
nsv475807 CNV novel sequence insertion 20440878

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101593348 Gene

Disorders for LOC101593348 Gene

No disorders were found for LOC101593348 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101593348 Gene

Publications for LOC101593348 Gene

No publications were found for LOC101593348 Gene.

No data available for Mastermind for LOC101593348 Gene

Products for LOC101593348 Gene

Sources for LOC101593348 Gene