Aliases for LOC101060400 Gene

Data sources for LOC101060400 Gene:

RNA type for LOC101060400 Gene

ncRNA

Aliases for LOC101060400 Gene

External Ids for LOC101060400 Gene

Previous GeneCards Identifiers for LOC101060400 Gene

  • GC17U901764
  • GC17M048636
  • GC17M048639
  • GC17M048642
  • GC17M048637

Summaries for LOC101060400 Gene

GeneCards Summary for LOC101060400 Gene

LOC101060400 (Translation Initiation Factor IF-2) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC101060400 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101060400 Gene

Genomics for LOC101060400 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC101060400 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J048645 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 250.7 +0.7 713 2.8 IKZF1 ZNF600 ZNF580 NFIC ZIC2 ZBTB10 SMAD5 ZNF341 KLF7 IRF2 HOXB9 ENSG00000272763 LOC101060400 LINC02086 ENSG00000230532 HOXB2 ENSG00000266821 ATP5MC1 CALCOCO2 MRPL10
GH17J048636 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +10.8 10804 0.8 ZNF600 MYC ZNF592 REST KLF11 BHLHE40 HOMEZ CTCF THAP11 HCFC1 LRRC46 MRPL10 HOXB7 ENSG00000272763 LINC02086 LOC101060400 PRAC2
GH17J048642 Enhancer 0.7 ENCODE dbSUPER 0.7 +4.9 4949 0.2 ETS1 POLR2A CTCF ZBTB33 SIN3A EZH2 XRCC5 ENSG00000272763 LOC101060400 LINC02086 HOXB7 PRAC2
GH17J048639 Enhancer 0.4 dbSUPER 0.4 +7.3 7252 1.2 FEZF1 PRDM10 CBX8 ZSCAN5C LRRC46 HOXB2 CDK5RAP3 HOXB7 ENSG00000272763 LINC02086 LOC101060400 PRAC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101060400 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101060400 Gene

Latest Assembly
chr17:48,634,804-48,647,513
(GRCh38/hg38)
Size:
12,710 bases
Orientation:
Minus strand

Genomic View for LOC101060400 Gene

Genes around LOC101060400 on UCSC Golden Path with GeneCards custom track
LOC101060400 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC101060400 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101060400 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101060400 Gene

Proteins for LOC101060400 Gene

Post-translational modifications for LOC101060400 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101060400 Gene

Domains & Families for LOC101060400 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101060400 Gene

Function for LOC101060400 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101060400 Gene

Localization for LOC101060400 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101060400 Gene

Pathways & Interactions for LOC101060400 Gene

PathCards logo

SuperPathways for LOC101060400 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101060400 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101060400 Gene

Drugs & Compounds for LOC101060400 Gene

No Compound Related Data Available

Transcripts for LOC101060400 Gene

LOC101060400 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101060400 Gene

No ASD Table

Relevant External Links for LOC101060400 Gene

GeneLoc Exon Structure for
LOC101060400

No data available for mRNA/cDNA for LOC101060400 Gene

Expression for LOC101060400 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101060400

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101060400 Gene

Orthologs for LOC101060400 Gene

No data available for Orthologs and Evolution for LOC101060400 Gene

Paralogs for LOC101060400 Gene

No data available for Paralogs for LOC101060400 Gene

Variants for LOC101060400 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC101060400 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC101060400 Gene

Disorders for LOC101060400 Gene

No disorders were found for LOC101060400 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101060400 Gene

Publications for LOC101060400 Gene

  1. Genome-wide association study of body mass index in 23 000 individuals with and without asthma. (PMID: 23517042) Melén E … Lasky-Su J (Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology 2013) 3
  2. A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB. (PMID: 19734545) Need AC … Goldstein DB (Human molecular genetics 2009) 3

No data available for Mastermind for LOC101060400 Gene

Products for LOC101060400 Gene

Sources for LOC101060400 Gene