LOC101059948 Gene (RNA Gene)

Uncharacterized LOC101059948

GC19M049026
GIFtS:
9
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Aliases for LOC101059948 Gene

Subcategory (RNA class) for LOC101059948 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC101059948 Gene

  • Uncharacterized LOC101059948 3
  • NONHSAG026211.2 91
  • CTB-60B18.10 3
  • Lnc-LHB-1 165

External Ids for LOC101059948 Gene

Previous GeneCards Identifiers for LOC101059948 Gene

  • GC19U901640
  • GC19M049524
  • GC19M049018
  • GC19M049019
  • GC19M049021

Summaries for LOC101059948 Gene

GeneCards Summary for LOC101059948 Gene

LOC101059948 (Uncharacterized LOC101059948) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101059948 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101059948 Gene

Genomics for LOC101059948 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC101059948 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19J049018 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE 600.7 +0.8 797 3 CTCF ZBTB33 IKZF1 LARP7 ZIC2 RBFOX2 PATZ1 REST TRIM22 EZH2 ENSG00000268655 LOC101059948 LHB RUVBL2 CGB3 GYS1 CGB7 NTF4
GH19J049020 Enhancer 0.7 FANTOM5 600.7 -1.6 -1571 0.3 PRDM10 ZNF692 KLF9 ZBTB20 SP2 ZBTB17 MNT BHLHE40 ZNF2 KLF16 ENSG00000268655 LOC101059948 CGB3 RUVBL2 GYS1 CGB7 NTF4 CGB5
GH19J049021 Enhancer 0.4 ENCODE 600.7 -1.1 -1061 0.1 PRDM10 RFX1 PKNOX1 ZBTB6 ENSG00000268655 LOC101059948 RUVBL2 GYS1 CGB7 NTF4 CGB3
GH19J049017 Promoter 0.5 EPDnew 0.7 +2.4 2388 0.1 POLR2A EGR1 LHB ENSG00000268655 GYS1 RUVBL2 CGB7 NTF4 LOC101059948
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101059948 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC101059948 Gene

Genomic Locations for LOC101059948 Gene
chr19:49,015,879-49,019,498
(GRCh38/hg38)
Size:
3,620 bases
Orientation:
Minus strand
chr19:49,521,504-49,522,741
(GRCh37/hg19)
Size:
1,238 bases
Orientation:
Minus strand

Genomic View for LOC101059948 Gene

Genes around LOC101059948 on UCSC Golden Path with GeneCards custom track
LOC101059948 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC101059948 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101059948 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC101059948 Gene

Proteins for LOC101059948 Gene

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Post-translational modifications for LOC101059948 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101059948 Gene

Domains & Families for LOC101059948 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101059948 Gene

Function for LOC101059948 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC101059948 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101059948 Gene

Localization for LOC101059948 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101059948 Gene

Pathways & Interactions for LOC101059948 Gene

PathCards logo

SuperPathways for LOC101059948 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101059948 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC101059948 Gene

Drugs & Compounds for LOC101059948 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC101059948 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC101059948 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B97E_9606 lncRNA 492 2

RefSeq: NR_073552,

LNCipedia: lnc-LHB-1:1,

URS0000381BB6_9606 lncRNA 493 2

LNCipedia: lnc-LHB-1:2,

NONCODE: NONHSAT067139.2,

URS0000D6EC28_9606 lncRNA 2774 1

LNCipedia: lnc-LHB-1:6,

URS0000D6E77D_9606 lncRNA 2575 1

LNCipedia: lnc-LHB-1:5,

URS0000D6DE03_9606 lncRNA 2511 1

LNCipedia: lnc-LHB-1:4,

LOC101059948 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC101059948 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101059948 Gene

No ASD Table

Relevant External Links for LOC101059948 Gene

GeneLoc Exon Structure for
LOC101059948

Expression for LOC101059948 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC101059948 Gene

mRNA expression in normal human tissues for LOC101059948 Gene
mRNA expression by GTEx for LOC101059948 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101059948 Gene

This gene is overexpressed in Pancreas (x12.6) and Testis (x11.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC101059948

SOURCE GeneReport for Unigene cluster for LOC101059948 Gene:

Hs.569932
genes like me logo Genes that share expression patterns with LOC101059948: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101059948 Gene

Orthologs for LOC101059948 Gene

No data available for Orthologs and Evolution for LOC101059948 Gene

Paralogs for LOC101059948 Gene

No data available for Paralogs for LOC101059948 Gene

Variants for LOC101059948 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC101059948 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC101059948 Gene

Variant ID Type Subtype PubMed ID
dgv3618n100 CNV gain 25217958
esv22462 CNV gain 19812545
nsv833857 CNV loss 17160897
nsv833859 CNV loss 17160897
nsv953598 CNV deletion 24416366
nsv9739 CNV gain+loss 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC101059948 Gene

Disorders for LOC101059948 Gene

No disorders were found for LOC101059948 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101059948 Gene

Publications for LOC101059948 Gene

No publications were found for LOC101059948 Gene.

No data available for Mastermind for LOC101059948 Gene

Products for LOC101059948 Gene

Sources for LOC101059948 Gene