Aliases for LOC101059948 Gene
Subcategory (RNA class) for LOC101059948 Gene
lncRNA
Quality Score for this RNA gene is
13
Aliases for LOC101059948 Gene
External Ids for LOC101059948 Gene
- Entrez Gene: 101059948
Previous GeneCards Identifiers for LOC101059948 Gene
- GC19U901640
- GC19M049524
- GC19M049018
Summaries for LOC101059948 Gene
GeneCards Summary for LOC101059948 Gene
LOC101059948 (Uncharacterized LOC101059948) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC101059948 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101059948 Gene
Genomics for LOC101059948 Gene
GeneHancer (GH) Regulatory Elements for LOC101059948 Gene
Promoters and enhancers for LOC101059948 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH19J049018 | Promoter/Enhancer | 1.3 | FANTOM5 Ensembl ENCODE | 750.6 | +0.8 | 797 | 3 | CTCF ZBTB6 L3MBTL2 SP7 CREM EGR1 GMEB1 IKZF1 GLIS2 ZIC2 | ENSG00000268655 LOC101059948 LHB RUVBL2 CGB3 GYS1 CGB7 NTF4 | |
| GH19J049020 | Enhancer | 0.6 | FANTOM5 | 750.6 | -1.6 | -1571 | 0.3 | MNT PRDM10 ZNF692 SP2 ZBTB20 ZBTB17 BHLHE40 ZNF2 SP3 KLF16 | ENSG00000268655 LOC101059948 CGB3 GYS1 RUVBL2 CGB7 NTF4 CGB5 | |
| GH19J049021 | Enhancer | 0.4 | ENCODE | 750.6 | -1.1 | -1061 | 0.1 | ZBTB6 PRDM10 RFX1 PKNOX1 | ENSG00000268655 LOC101059948 GYS1 RUVBL2 CGB7 NTF4 CGB3 | |
| GH19J049017 | Promoter | 0.5 | EPDnew | 0.6 | +2.4 | 2388 | 0.1 | EGR1 POLR2A | LHB ENSG00000268655 GYS1 RUVBL2 CGB7 NTF4 LOC101059948 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC101059948 on UCSC Golden Path with GeneCards custom track
Genomic Locations for LOC101059948 Gene
Genomic Locations for LOC101059948 Gene
- chr19:49,015,879-49,019,498
- (GRCh38/hg38)
- Size:
- 3,620 bases
- Orientation:
- Minus strand
- chr19:49,521,504-49,522,741
- (GRCh37/hg19)
- Size:
- 1,238 bases
- Orientation:
- Minus strand
Genomic View for LOC101059948 Gene
Genes around LOC101059948 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19q13.33 by Entrez Gene
LOC101059948 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC101059948 Gene
Proteins for LOC101059948 Gene
Post-translational modifications for LOC101059948 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC101059948
- Origene Custom Protein Services for LOC101059948
No data available for DME Specific Peptides for LOC101059948 Gene
Domains & Families for LOC101059948 Gene
Gene Families for LOC101059948 Gene
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101059948 Gene
Function for LOC101059948 Gene
Phenotypes From GWAS Catalog for LOC101059948 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101059948 Gene
Localization for LOC101059948 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101059948 Gene
Transcripts for LOC101059948 Gene
mRNA/cDNA for LOC101059948 Gene
- (1) REFSEQ mRNAs :
- (1) Additional mRNA sequences :
- (7) RNACentral transcripts :
- (7) LNCipedia transcripts :
- (1) NONCODE transcripts :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC101059948 Gene
- GeneLoc Exon Structure for
- LOC101059948
Expression for LOC101059948 Gene
mRNA differential expression in normal tissues according to GTEx for LOC101059948 Gene
This gene is overexpressed in Pancreas (x12.6) and Testis (x11.7).
SOURCE GeneReport for Unigene cluster for LOC101059948 Gene:
Hs.569932Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101059948 Gene
Orthologs for LOC101059948 Gene
No data available for Orthologs and Evolution for LOC101059948 Gene
Paralogs for LOC101059948 Gene
No data available for Paralogs for LOC101059948 Gene
Variants for LOC101059948 Gene
| SNP ID | Clin | Chr 19 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000208272 | -- | 49,019,680(-) | T/C | upstream_transcript_variant | |
| rs1000577681 | -- | 49,018,504(-) | C/T | intron_variant | |
| rs1003134259 | -- | 49,021,200(-) | C/T | upstream_transcript_variant | |
| rs1003435177 | -- | 49,019,989(-) | C/G | upstream_transcript_variant | |
| rs1003465366 | -- | 49,020,196(-) | C/T | upstream_transcript_variant |
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101059948 Gene
Disorders for LOC101059948 Gene
No disorders were found for LOC101059948 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101059948 Gene
Publications for LOC101059948 Gene
No publications were found for LOC101059948 Gene.
No data available for External Links for LOC101059948 Gene
Products for LOC101059948 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
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Sources for LOC101059948 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource