Aliases for LOC101059948 Gene

Subcategory (RNA class) for LOC101059948 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for LOC101059948 Gene

  • Uncharacterized LOC101059948 3
  • NONHSAG026211 94
  • CTB-60B18.10 3
  • Lnc-LHB-1 170

External Ids for LOC101059948 Gene

Previous GeneCards Identifiers for LOC101059948 Gene

  • GC19U901640
  • GC19M049524
  • GC19M049018

Summaries for LOC101059948 Gene

GeneCards Summary for LOC101059948 Gene

LOC101059948 (Uncharacterized LOC101059948) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC101059948 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC101059948 Gene

Genomics for LOC101059948 Gene

GeneHancer (GH) Regulatory Elements for LOC101059948 Gene

Promoters and enhancers for LOC101059948 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J049018 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE 750.6 +0.8 797 3 CTCF ZBTB6 L3MBTL2 SP7 CREM EGR1 GMEB1 IKZF1 GLIS2 ZIC2 ENSG00000268655 LOC101059948 LHB RUVBL2 CGB3 GYS1 CGB7 NTF4
GH19J049020 Enhancer 0.6 FANTOM5 750.6 -1.6 -1571 0.3 MNT PRDM10 ZNF692 SP2 ZBTB20 ZBTB17 BHLHE40 ZNF2 SP3 KLF16 ENSG00000268655 LOC101059948 CGB3 GYS1 RUVBL2 CGB7 NTF4 CGB5
GH19J049021 Enhancer 0.4 ENCODE 750.6 -1.1 -1061 0.1 ZBTB6 PRDM10 RFX1 PKNOX1 ENSG00000268655 LOC101059948 GYS1 RUVBL2 CGB7 NTF4 CGB3
GH19J049017 Promoter 0.5 EPDnew 0.6 +2.4 2388 0.1 EGR1 POLR2A LHB ENSG00000268655 GYS1 RUVBL2 CGB7 NTF4 LOC101059948
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC101059948 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC101059948 Gene

Genomic Locations for LOC101059948 Gene
chr19:49,015,879-49,019,498
(GRCh38/hg38)
Size:
3,620 bases
Orientation:
Minus strand
chr19:49,521,504-49,522,741
(GRCh37/hg19)
Size:
1,238 bases
Orientation:
Minus strand

Genomic View for LOC101059948 Gene

Genes around LOC101059948 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC101059948 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC101059948 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC101059948 Gene

Proteins for LOC101059948 Gene

Post-translational modifications for LOC101059948 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC101059948 Gene

Domains & Families for LOC101059948 Gene

Gene Families for LOC101059948 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
genes like me logo Genes that share domains with LOC101059948: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC101059948 Gene

Function for LOC101059948 Gene

Phenotypes From GWAS Catalog for LOC101059948 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC101059948 Gene

Localization for LOC101059948 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC101059948 Gene

Pathways & Interactions for LOC101059948 Gene

PathCards logo

SuperPathways for LOC101059948 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC101059948 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC101059948 Gene

Drugs & Compounds for LOC101059948 Gene

No Compound Related Data Available

Transcripts for LOC101059948 Gene

mRNA/cDNA for LOC101059948 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(7) RNACentral transcripts :
(7) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC101059948 Gene

No ASD Table

Relevant External Links for LOC101059948 Gene

GeneLoc Exon Structure for
LOC101059948

Expression for LOC101059948 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC101059948 Gene

mRNA differential expression in normal tissues according to GTEx for LOC101059948 Gene

This gene is overexpressed in Pancreas (x12.6) and Testis (x11.7).

SOURCE GeneReport for Unigene cluster for LOC101059948 Gene:

Hs.569932
genes like me logo Genes that share expression patterns with LOC101059948: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC101059948 Gene

Orthologs for LOC101059948 Gene

No data available for Orthologs and Evolution for LOC101059948 Gene

Paralogs for LOC101059948 Gene

No data available for Paralogs for LOC101059948 Gene

Variants for LOC101059948 Gene

Sequence variations from dbSNP and Humsavar for LOC101059948 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000208272 -- 49,019,680(-) T/C upstream_transcript_variant
rs1000577681 -- 49,018,504(-) C/T intron_variant
rs1003134259 -- 49,021,200(-) C/T upstream_transcript_variant
rs1003435177 -- 49,019,989(-) C/G upstream_transcript_variant
rs1003465366 -- 49,020,196(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC101059948 Gene

Variant ID Type Subtype PubMed ID
dgv3618n100 CNV gain 25217958
esv22462 CNV gain 19812545
nsv833857 CNV loss 17160897
nsv833859 CNV loss 17160897
nsv953598 CNV deletion 24416366
nsv9739 CNV gain+loss 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC101059948 Gene

Disorders for LOC101059948 Gene

No disorders were found for LOC101059948 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC101059948 Gene

Publications for LOC101059948 Gene

No publications were found for LOC101059948 Gene.

No data available for External Links for LOC101059948 Gene

Products for LOC101059948 Gene

Sources for LOC101059948 Gene