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Aliases for LOC100996842 Gene

Aliases for LOC100996842 Gene

  • Uncharacterized LOC100996842 3
  • AC016876.1 5

External Ids for LOC100996842 Gene

Previous GeneCards Identifiers for LOC100996842 Gene

  • GC17U901727
  • GC17M007581

Summaries for LOC100996842 Gene

GeneCards Summary for LOC100996842 Gene

LOC100996842 (Uncharacterized LOC100996842) is a Protein Coding gene.

Additional gene information for LOC100996842 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100996842 Gene

Genomics for LOC100996842 Gene

GeneHancer (GH) Regulatory Elements for LOC100996842 Gene

Promoters and enhancers for LOC100996842 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I007233 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 34.1 +346.1 346125 11.3 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF416 DVL2 GABARAP PHF23 CNTROB SNORD10 NEURL4 SNORA48 WRAP53 POLR2A KCTD11
GH17I008185 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 29.5 -603.6 -603550 5.9 CLOCK MLX ZFP64 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC BORCS6 ENSG00000279152 GC17M008515 GC17M008516 PIR38375 PIR38980 PIR40201 PIR49700 MIR4521 TRI-AAT5-5
GH17I007833 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 18.2 -254.9 -254945 12.5 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF416 KDM6B DVL2 PFAS CTC1 WRAP53 CNTROB POLR2A SNORD10 SNORA48 PER1
GH17I007571 Promoter/Enhancer 2.6 EPDnew Ensembl ENCODE dbSUPER 18.6 +6.6 6625 14.2 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 SNORD10 EIF4A1 GC17P007735 GC17P007737 GC17P007739 GC17P007742 PIR46508 SNORA67 CD68 MPDU1
GH17I008117 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 21 -536.5 -536483 7.7 CLOCK FEZF1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 ZFP41 SSRP1 HES7 ALOXE3 GC17M008514 TRQ-CTG1-5 TRR-TCT2-1 TRL-TAG1-1 NEURL4 SENP3 NLGN2 DVL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100996842 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100996842 Gene

Genomic Locations for LOC100996842 Gene
chr17:7,581,964-7,584,784
(GRCh38/hg38)
Size:
2,821 bases
Orientation:
Minus strand

Genomic View for LOC100996842 Gene

Genes around LOC100996842 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100996842 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100996842 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100996842 Gene

Proteins for LOC100996842 Gene

Post-translational modifications for LOC100996842 Gene

No Post-translational modifications

Other Protein References for LOC100996842 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC100996842 Gene

Domains & Families for LOC100996842 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100996842 Gene

Function for LOC100996842 Gene

Phenotypes From GWAS Catalog for LOC100996842 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100996842 Gene

Localization for LOC100996842 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100996842 Gene

Pathways & Interactions for LOC100996842 Gene

SuperPathways for LOC100996842 Gene

No Data Available

Interacting Proteins for LOC100996842 Gene

Gene Ontology (GO) - Biological Process for LOC100996842 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100996842 Gene

Drugs & Compounds for LOC100996842 Gene

No Compound Related Data Available

Transcripts for LOC100996842 Gene

mRNA/cDNA for LOC100996842 Gene

(2) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100996842 Gene

No ASD Table

Relevant External Links for LOC100996842 Gene

GeneLoc Exon Structure for
LOC100996842

Expression for LOC100996842 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100996842 Gene

genes like me logo Genes that share expression patterns with LOC100996842: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100996842 Gene

Orthologs for LOC100996842 Gene

Evolution for LOC100996842 Gene

ENSEMBL:
Gene Tree for LOC100996842 (if available)
TreeFam:
Gene Tree for LOC100996842 (if available)

No data available for Orthologs for LOC100996842 Gene

Paralogs for LOC100996842 Gene

No data available for Paralogs for LOC100996842 Gene

Variants for LOC100996842 Gene

Sequence variations from dbSNP and Humsavar for LOC100996842 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs104894586 pathogenic, uncertain-significance, Congenital disorder of glycosylation type 1F, not specified 7,585,994(-) G/A upstream_transcript_variant
rs104894588 pathogenic, Congenital disorder of glycosylation type 1F 7,583,864(-) T/C genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs104894589 pathogenic, Congenital disorder of glycosylation type 1F 7,585,997(-) T/C upstream_transcript_variant
rs148935720 uncertain-significance, likely-benign, Congenital disorder of glycosylation, not provided 7,583,905(-) C/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs199498675 uncertain-significance, Congenital disorder of glycosylation 7,585,749(-) C/G/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100996842 Gene

Disorders for LOC100996842 Gene

Additional Disease Information for LOC100996842

No disorders were found for LOC100996842 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100996842 Gene

Publications for LOC100996842 Gene

  1. Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men. (PMID: 24049095) Chen Z … Sun J (Journal of medical genetics 2013) 3 58
  2. Identification of genes related to Parkinson's disease using expressed sequence tags. (PMID: 17213182) Kim JM … Kim NS (DNA research : an international journal for rapid publication of reports on genes and genomes 2006) 3 58

Products for LOC100996842 Gene

Sources for LOC100996842 Gene

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